Query= MSMg01no307_l23.b1 MSMg01no307_l23.b1 CHROMAT_FILE:
MSMg01no307_l23.b1 PHD_FILE: MSMg01no307_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:53 2005
(234 letters)
>mm_chr4_46820132_46820765
Length = 634
Score = 437 bits (226), Expect = e-127
Identities = 232/234 (99%)
Strand = Plus / Plus
Query: 1 actctcagagggccctgaagagagacactgttgggagttaggaagcccctgagtcagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctcagagggccctgaagagagacactgttgggagttaggaagcccctgagtcagaaa 260
Query: 61 gctattcctgtctagtgtgcttctggagagtagagggcctgttcctagccaggagggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gctattcctgtctagtgtgcttctggagagtagagggcctgttcctagccaggagagcag 320
Query: 121 ggggagcaggagccaaggtggttgctgccttgagagcaggtgaagtgttgggtcaaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagcaggagccaaggtggttgctgccttgagagcaggtgaagtgttgggtcaaatgg 380
Query: 181 gaaacacgcatctgggattaaggcagcatccaaggaggtgtatggggagttgtg 234
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gaaacacgcatctgggattaaggcagcatccaaggaggtgtatggagagttgtg 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no307_l23.g1 MSMg01no307_l23.g1 CHROMAT_FILE:
MSMg01no307_l23.g1 PHD_FILE: MSMg01no307_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:53 2005
(228 letters)
>mm_chr4_47010249_47010876
Length = 628
Score = 315 bits (163), Expect = 1e-90
Identities = 219/255 (85%), Gaps = 27/255 (10%)
Strand = Plus / Minus
Query: 1 ccacagagtctggattcatggaattagtagtgtggtaggccagaggagccccg------- 53
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 508 ccacagagtctggattcatggaattagtagtgtggcaggccagaggagccccgagacatc 449
Query: 54 --------------------aacgcatcaagaatggtcacgtttctccggtgagaggtgg 93
||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtgcaccagagcttctgtcaaacgcatcaagaatggtcacgtttctccggtgagaggtgg 389
Query: 94 ggaaatgcaggctgtaggatgtgggagtgcaatggttgtgagatttaatcctggtgtgta 153
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 388 ggaaatgcaggctgtaggatgtgggagtgcagtggttgtgagatttaatcctggtatgta 329
Query: 154 atgcccagtgtgggcagactcatggctgcggctcttgcttttttttgtttaacattctgg 213
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 328 atgcccagtgtgggcagactcatggctgcggctcttgctctctcctgtttaacattctgg 269
Query: 214 acaatgctttaggac 228
||||| ||||||||
Sbjct: 268 tcaatgttttaggac 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
