Query= MSMg01no308_a08.b1 MSMg01no308_a08.b1 CHROMAT_FILE:
MSMg01no308_a08.b1 PHD_FILE: MSMg01no308_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:14 2005
(299 letters)
>mm_chr4_98532019_98532716
Length = 698
Score = 511 bits (264), Expect = e-149
Identities = 290/302 (96%), Gaps = 7/302 (2%)
Strand = Plus / Minus
Query: 1 attagaaacagggcgaggaagcacaggagaggtacagcgcatgcgcagtataccctggtc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 attagaaacagggcgaggaagcacaggagaggtacagcgcgtgcgcagtataccctggtc 439
Query: 61 tctcagtcgtgggttgggtatgtagccaaacacccctcatgtttctgaaaataaaatgag 120
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 438 tctcaatcgtgggttgggtatgtagccaaacaccccccatgtttctgaaaataaaatgag 379
Query: 121 ggtctggctctggtatccgtgggaaattgacctagtccacttgtattttatttccgtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtctggctctggtatccgtgggaaattgacctagtccacttgtattttatttccgtcaa 319
Query: 181 aggtgtataatgtgttgcagatttttctgctcttctgcagtctataaagaaataggaaga 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggtgcataatgtgttgcagatttttctgctcttctgcagtctataaagaaataggaaga 259
Query: 241 aaagccagtcctg---ttttatagaaagatgctgctggcccagagcccagaaccttcctt 297
||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaagccagtcctgaaa----agagaaagatgctgctggcccagagcccagaaccttcctt 203
Query: 298 ct 299
||
Sbjct: 202 ct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space: 199810
Effective search space used: 199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_a08.g1 MSMg01no308_a08.g1 CHROMAT_FILE:
MSMg01no308_a08.g1 PHD_FILE: MSMg01no308_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:14 2005
(107 letters)
>mm_chr4_98376307_98376813
Length = 507
Score = 184 bits (95), Expect = 2e-51
Identities = 104/107 (97%)
Strand = Plus / Plus
Query: 1 cacacgaagacctcccaatttatgtcaagactatattttcaaaggtaatgatgtgttaga 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cacacgaagacctcccaatttatgtcaagactatattttcaaaggtattgatgtgttaga 260
Query: 61 atggtaggttgcatctcaacagcacactagaccaagacagttccacg 107
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcgggttgcatctcaacagcacactagaccaagacagttccacg 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space: 49401
Effective search space used: 49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
