CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATAATTGAACAAATATTTATTGGGCCATCTTGGATATATGGCT
TATCATTTGGAATACAAATCCCTTTCAAAATAGATTTGTATAGAACTATA
GTTTCTAATGAAAAGCATTTTCTTTTATCCTGTACAGCCATATGAAAACT
ATAGAACACAGGCCATTTTGCTCAAAGACCTGATAAAGCATTCAAATGTG
TCATAATAAAGACAATGTGTTTGAGTATGCAATGTCAGTAGAAGTGCTCT
TTTTGGACATTGTAGAGTTTGAATCCTCCACCTCTGTACTCTGCTCTAGA
CTTCAGAGATCCTGGTATCAGGGATTCAGTCGAAGACATTCTTACTTTTA
ACATACAGTAACTGAATAACACGCCTATTTAGAGATAATGATTTAAATTC
TCTATGATAGCAAGTTTCAAGTTGCTTCATGTTGAAGCAGACATGTTGGG
AGATCTTTTCCTGACAACAGACACACAGTATGGTGATTTTCTGGAAACAG
TCTGGAAAAGGGGCATGTGCTGCTTTGCTAGAGTAGACACTTGAGAGAAC
TCATGATGTTTAGAACAGGTATAAATATAATCCAACTTATGGTAGAGAGT
GTTGTGTGTTAGTGGTATACCTTAACATTCCTTGCTGGCTGTTGTTGGGC
ACGGCTAACACTGGTCTTCACTGATGATGC

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAGGTTTGGTGAATTTAGG
TGTGTGATGATTTTTAATGGAAACATGATTGTAATTATTTTATAACAAGT
CGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATG
TATATGTCTATGCCCTCNTTTCCCTCCCCCTCTTCTTTTCTTTTTCCCCT
TCCCCCCCTTTCTCTTTCCCCTCCCCCTTCTCTTTTCTCTTCCCCCCCCC
TCCCCCTCCCTTCCCTTCCTCCTCCCTTTTTTTTTCTTCNCCCCTTCCTT
CTTCCCCCTTTTTCTCTCTTTTTTTTTTTTTTCCCCCCCCCCCCCTCCCC
TCTTTCCCTNTCTCTCTCTTTTTTTCTTTTCCCCCCCCCCCCAAAAAAAC
TCTCTTTTCCATCCTTATCTCCCCCTTTCCTTTCCCCCCCCCCCCCCCTT
ATCATCCCGTCTTTTTCCCCCCCCCCCTCCCTTATTTTCTCCCCCGTCCC
CTATTTTCTCCCCCCGCTTATTTTCTCCTTTTTTCGTCCCCCTCCTCCCC
CCCCCTTTTCCCTTCTTTTCTTTCCCCCCCCACCCCTCCCACCCTCTCAC
TCTCCTATTTTCGTCGCTCTCTTCTTCTCCCCTATATTCTCCCCCCCCCT
ATTTACGTTTTCNTCCCCCCCCCTCTCTCTCCCAATATCTTCTTCCCCCT
ATTTATCCCCCTCCCTCTTTCCCCTCCCCCTCTACCCCCATCTTTACCTC
TCTTCTCCGCCACCCCCATTTTTCCCCTCTTCCG

Query= MSMg01no308_b08.b1 MSMg01no308_b08.b1 CHROMAT_FILE:
MSMg01no308_b08.b1 PHD_FILE: MSMg01no308_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:19 2005
         (674 letters)



>mm_chr4_71346211_71347284
          Length = 1074

 Score = 1195 bits (618), Expect = 0.0
 Identities = 653/670 (97%), Gaps = 9/670 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaataattgaacaaatatttattgggccatcttggatatatggcttatcatttg 64
           ||||||||||||||||||| ||||||||||||||||||||||         |||||||||
Sbjct: 680 gaattccaataattgaacatatatttattgggccatcttgga---------tatcatttg 630

                                                                       
Query: 65  gaatacaaatccctttcaaaatagatttgtatagaactatagtttctaatgaaaagcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaatacaaatccctttcaaaatagatttgtatagaactatagtttctaatgaaaagcatt 570

                                                                       
Query: 125 ttcttttatcctgtacagccatatgaaaactatagaacacaggccattttgctcaaagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttcttttatcctgtacagccatatgaaaactatagaacacaggccattttgctcaaagac 510

                                                                       
Query: 185 ctgataaagcattcaaatgtgtcataataaagacaatgtgtttgagtatgcaatgtcagt 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 509 ctgataaagcattcaaatgtgtcataataaaggcaatgtgtttgagtatgcaatgtcagt 450

                                                                       
Query: 245 agaagtgctctttttggacattgtagagtttgaatcctccacctctgtactctgctctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agaagtgctctttttggacattgtagagtttgaatcctccacctctgtactctgctctag 390

                                                                       
Query: 305 acttcagagatcctggtatcagggattcagtcgaagacattcttacttttaacatacagt 364
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acttcaaagttcctggtatcagggattcagtcgaagacattcttacttttaacatacagt 330

                                                                       
Query: 365 aactgaataacacgcctatttagagataatgatttaaattctctatgatagcaagtttca 424
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aactgaataaaatgcctatttagagataatgatttaaattctctatgatagcaagtttca 270

                                                                       
Query: 425 agttgcttcatgttgaagcagacatgttgggagatcttttcctgacaacagacacacagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agttgcttcatgttgaagcagacatgttgggagatcttttcctgacaacagacacacagt 210

                                                                       
Query: 485 atggtgattttctggaaacagtctggaaaaggggcatgtgctgctttgctagagtagaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 atggtgattttctggaaacagtctggaaaaggggcatgtgctgctttgctagagtagaca 150

                                                                       
Query: 545 cttgagagaactcatgatgtttagaacaggtataaatataatccaacttatggtagagag 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 149 cttgagagaactcatgatgtttagaaaaggtataaatataatccaacttatggtagagag 90

                                                                       
Query: 605 tgttgtgtgttagtggtataccttaacattccttgctggctgttgttgggcacggctaac 664
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 89  tgttgtgtgttagtggtataccttaacattccttgcttgctgttgttgggcacggctaac 30

                     
Query: 665 actggtcttc 674
           ||||||||||
Sbjct: 29  actggtcttc 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)