TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGACATCTCAGATCCAAAGGTCCTATTTACTTTGCTCTAGGATAA
GGGCCTTGTCATCAGCATGCACACCTTTCAACCCTGCACGTAATCCTCAT
TTCTAGCCGGGTTGAGAACCTCTGTTTTAGATCATCTCAATGCAATGAGT
TTTCATTGAGTGCATATTTTCGTGCCAGGCACTAAGCTGTGTCAACTGCC
GCAGCCACATTGGTATCTGTATTTACATGGTAAGGCAAGGTCTCTCTTCC
CGAAAAGATCACCAGTGAATTGGGCAGTAGTCATGTGACTCAATGAATTG
CATACACACTAATGTCTGCTGTGATAGTAGTAGCCTGGAACCCAAAGGCA
GAAATAGTTGAGGTAACCCTTTGTTTTCATGTGTATGTGTCTGTATGCAT
GTGTGCACAAGTGTGAGCAGGTGTACGTGTGTGTCTGTGTGTGTGCTCAC
GAATGTGGAGGCCAGAAGTTGGTGCCACATGTTTTCTTCAATCACTTTTT
ATGTTGTTTTAACTTTTGCACATTTCTTAAAAGATTTTTTTTATTTTATG
TAAATGAGTGTTTTGCCTGCATGTTTGTCCGTGTACCACATGCATCCCTA
GTACCCACAGAGGTCAGAAGAGGGCACTGAATACTCTGAAATGGGAGTTA
TGGGTGGTTCTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATCTGTTCTCTGGTTTTGAAAC
CCCGACGGAAGGCAAAGATATAGCAAGAGAGAAAAGTCTAAAACCTTAAT
TACTAGCACCTGAAAGCTAAAAGACATTCTATCAAGAACTCGGAAAGGAA
TACTCTCCTGGGGGAGGCGTGCCAATTCATCTGAATGAGGGAGAGATTAG
CACTCTGAAAAGTAAATCTGCATGCACATCCCACCACTGGGGAAGCTGAG
GCAGGAGAACTTCCAGGTCAAAGTTTACCTTGGGTTACAGAGTGAGGTGG
GCACCAGAAATTTATTGTTATGCCCCACCCCCTCCCATCACCTCCTCCCT
ACCCCCCGCCACACACACCCCCACACAAAAGACAAAAAAAAAAGGGGGGG
GGGAGGAACAGGNATGTAACTCCGGAGTCTGACCACTTACTAAGCAAGAT
GACTTATGTTTAATCACATGCACTGGGGGGGGGGGGGAGTGCTTTCCTTT
CCTTCTCCCCCTTTTTTCCCCCCCCTCTTCCCTTCTCCCTTCCCCCTTCT
CCCCCTTTTTCCCCCTTTTTNCCTCCCCTTCTTTCCCCCTCCCTTTTTTT
TTTCTTCCCCTCCCTCCCCCCCTTCCTCCCCCCGATACCCTTTTTATCCA
CCCCTCCCC

Query= MSMg01no308_i18.b1 MSMg01no308_i18.b1 CHROMAT_FILE:
MSMg01no308_i18.b1 PHD_FILE: MSMg01no308_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:53 2005
         (665 letters)



>mm_chr4_55139623_55140687
          Length = 1065

 Score = 1263 bits (653), Expect = 0.0
 Identities = 659/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagacatctcagatccaaaggtcctatttactttgctctaggataagggccttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcagacatctcagatccaaaggtcctatttactttgctctaggataagggccttgt 649

                                                                       
Query: 65  catcagcatgcacacctttcaaccctgcacgtaatcctcatttctagccgggttgagaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 catcagcatgcacacctttcaaccctgcacgtaatcctcatttctagccgggttgagaac 589

                                                                       
Query: 125 ctctgttttagatcatctcaatgcaatgagttttcattgagtgcatattttcgtgccagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctctgttttagatcatctcaatgcaatgagttttcattgagtgcatattttcgtgccagg 529

                                                                       
Query: 185 cactaagctgtgtcaactgccgcagccacattggtatctgtatttacatggtaaggcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cactaagctgtgtcaactgccgcagccacattggtatctgtatttacatggtaaggcaag 469

                                                                       
Query: 245 gtctctcttcccgaaaagatcaccagtgaattgggcagtagtcatgtgactcaatgaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtctctcttcccgaaaagatcaccagtgaattgggcagtagtcatgtgactcaatgaatt 409

                                                                       
Query: 305 gcatacacactaatgtctgctgtgatagtagtagcctggaacccaaaggcagaaatagtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gcatacacactaatgtctgctgtgatagtagtagcctggaacccaaaggcagaaatagtt 349

                                                                       
Query: 365 gaggtaaccctttgttttcatgtgtatgtgtctgtatgcatgtgtgcacaagtgtgagca 424
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaggtaagtctttgttttcatgtgtatgtgtctgtatgcatgtgtgcacaagtgtgagca 289

                                                                       
Query: 425 ggtgtacgtgtgtgtctgtgtgtgtgctcacgaatgtggaggccagaagttggtgccaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggtgtacgtgtgtgtctgtgtgtgtgctcacgaatgtggaggccagaagttggtgccaca 229

                                                                       
Query: 485 tgttttcttcaatcactttttatgttgttttaacttttgcacatttcttaaaagattttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgttttcttcaatcactttttatgttgttttaacttttgcacatttcttaaaagattttt 169

                                                                       
Query: 545 tttattttatgtaaatgagtgttttgcctgcatgtttgtccgtgtaccacatgcatccct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tttattttatgtaaatgagtgttttgcctgcatgtttgtccgtgtaccacatgcatccct 109

                                                                       
Query: 605 agtacccacagaggtcagaagagggcactgaatactctgaaatgggagttatgggtggtt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 agtacccacagaggtcagaagagggcactgaatactctgaaatgggagttatgggtggtt 49

            
Query: 665 c 665
           |
Sbjct: 48  c 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no308_i18.g1 MSMg01no308_i18.g1 CHROMAT_FILE:
MSMg01no308_i18.g1 PHD_FILE: MSMg01no308_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:53 2005
         (287 letters)



>mm_chr4_55114827_55115513
          Length = 687

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatctgttctctggttttgaaaccccgacggaaggcaaagatatagcaagagagaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatctgttctctggttttgaaaccccgacggaaggcaaagatatagcaagagagaaaag 260

                                                                       
Query: 61  tctaaaaccttaattactagcacctgaaagctaaaagacattctatcaagaactcggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaaaccttaattactagcacctgaaagctaaaagacattctatcaagaactcggaaa 320

                                                                       
Query: 121 ggaatactctcctgggggaggcgtgccaattcatctgaatgagggagagattagcactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatactctcctgggggaggcgtgccaattcatctgaatgagggagagattagcactct 380

                                                                       
Query: 181 gaaaagtaaatctgcatgcacatcccaccactggggaagctgaggcaggagaacttccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaagtaaatctgcatgcacatcccaccactggggaagctgaggcaggagaacttccag 440

                                                       
Query: 241 gtcaaagtttaccttgggttacagagtgaggtgggcaccagaaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcaaagtttaccttgggttacagagtgaggtgggcaccagaaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)