BAC Information

Click to search

BAC

Clone NameMSMg01-312F17
Chromosome4 (Build37)
Map Location 122,494,009 - 122,494,290
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
Downstream genePpt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312F17.T7 (MSMg01no312_f17.b1)MSMg01-312F17.TJ (MSMg01no312_f17.g1)
ACCAG434598AG434599
length732733
length of high quality
(start - end)
313 (41 - 353)282 (72 - 353)
definitionCHROMAT_FILE: MSMg01no312_f17.b1 PHD_FILE: MSMg01no312_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:25 2005CHROMAT_FILE: MSMg01no312_f17.g1 PHD_FILE: MSMg01no312_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGTGAGTATGCCACAGACACTCTGGGCCCCTTTGTCTGCATGGAACGGG
TCTCTAGTCGCATGTGCCCAAAGCGTTGGATGAGATGACAGACAGATGCA
CACAGGAGAGGTTGTGCAGAATCTGAATGTAATTTGTCAAATTGAGCATC
AAACTTTTTATACAGAAGAAAATAGGGAAGCTGGGTGACACACCAGCAAG
GTACAAAGAGGTTACTGAATTCTTACACAAAAACAGAAGAATACAAACAC
AGAAGTTCTAACAGGATCCACCTGGGATAGAATTCATTGTTAACAAATGA
GATCTTTAAGTGCNTCACCTCCCCCTCCCTTAATCTTAGAAGCCAGGGTC
AAGGGCTTTGTGCCCCTGCCATAAAAAAAAAATTAGTCTATTGTATAGTC
CACCTTCCCCCTAGGCCATTGTAAATACTTGTGTATGGGTATAACTCAGC
TATCTATAGTTCTAAGTATCTACTCTGCTTCCTCCTTAAGTCTCAAACTG
CCTTCTTCCTAGATGATGGTAAATTCCTGTGTAGGGCAGTGACTTAGCTT
TTGTTCAAAGTGATAGTGTAATACCAAAGGCAATTCTGAATGTCACTGAA
TAGGTAACATTCTTACTGAATTCCATGCCCATGGTCTGCTCAAGGACTTT
CTAGGACTTGGGAACACTGGTGAAGGCTTAGN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCTTTTTGAAATCTGATGGTTGGTCAAA
GGAACCGCTTATAGTGAGATGACTGCATAGGTGTAAATTCCACAGTGAAC
ATGGTAGTTACATTAGTGACAGACATCTCATTTCTCTCAATGGCAGGCCC
TGGTTGTTCCCTGGAACTAATAAGTAACACTAACAAGGAAGGGCAGATGG
TGCTGCACCCAGGCAGACCCATAAGAGGCAGGGTGTAATTCTTTATATTT
CTTGTGTTGGAATGGTAGTGTAGCTCAGTGGTAGAGCATACACTTAGCAT
TCATATGGGTTTGTTTCCGATCCCAGCCCTGGGAGAAAAAAAATCCCAAT
GGCTATTGACTACATGACCCAAAAAAAAGAACCTCACTTCTTCTTACATT
AGGAGGACTTATTTTTAATTCTTTCCCTCTTCCTTCCCTATAGATGGAGC
ACATTGGGTTAGAACACACACAAATATGAACCTATCCCGATGGCCAAATA
CACCTTGCTTTCTTTCTCTGATCTTAAACATTCATTTCCCTAGAAGGACA
CAATGGCACACATTTTTAATACCATCACTCAGGAGGCAGAGGCTGGAAGT
TCTCTGAGTTCCAGGCCAGTCAGTGAGACTCTATCTCAAAAATACATTTA
TTTTATCTGGTTTTAAAGCAAGCATTTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_f17.g1 MSMg01no312_f17.g1 CHROMAT_FILE:
MSMg01no312_f17.g1 PHD_FILE: MSMg01no312_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:25 2005
         (282 letters)



>mm_chr4_122493849_122494530
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctttttgaaatctgatggttggtcaaaggaaccgcttatagtgagatgactgcatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acctttttgaaatctgatggttggtcaaaggaaccgcttatagtgagatgactgcatagg 383

                                                                       
Query: 61  tgtaaattccacagtgaacatggtagttacattagtgacagacatctcatttctctcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtaaattccacagtgaacatggtagttacattagtgacagacatctcatttctctcaat 323

                                                                       
Query: 121 ggcaggccctggttgttccctggaactaataagtaacactaacaaggaagggcagatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcaggccctggttgttccctggaactaataagtaacactaacaaggaagggcagatggt 263

                                                                       
Query: 181 gctgcacccaggcagacccataagaggcagggtgtaattctttatatttcttgtgttgga 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctgcacccaggcagacccatcagaggcagggtgtaattctttatatttcttgtgttgga 203

                                                     
Query: 241 atggtagtgtagctcagtggtagagcatacacttagcattca 282
           |||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 202 atgggagtgtagctcagtggtagagcacacacttagcattca 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)