Query= MSMg01no313_b18.b1 MSMg01no313_b18.b1 CHROMAT_FILE:
MSMg01no313_b18.b1 PHD_FILE: MSMg01no313_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:26 2005
(407 letters)
>mm_chr4_150204132_150204938
Length = 807
Score = 694 bits (359), Expect = 0.0
Identities = 392/403 (97%), Gaps = 2/403 (0%)
Strand = Plus / Plus
Query: 5 gaattccttctcgagtcctggaagagtctgaggatgtgggtatggctgctatactgcact 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctcgcgtcctggaagagtctgaggatgtgggtatggctgctatactgcact 264
Query: 65 tgttggctgccaggaccgcaatcagcaatgctccctctgttgggctctcttctcctttag 124
||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcggctgccaggattgtaatcagcaatgctccctctgttgggctctcttctcctttag 324
Query: 125 ggtcaggtgcagaggccttgagaaatcctaggccgacaatcatgaactcaggtcgaaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 ggtcaggtgcagaggccttgagaaatcctaggccgacaatcatgaactcaggtcgtaagg 384
Query: 185 tctgagtataaaagccctcattctaagcaccatgtagggagtgcttgctgcctgtctact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgagtataaaagccctcattctaagcaccatgtagggagtgcttgctgcctgtctact 444
Query: 245 ctgtgttgttaaatctactcctatctttcacagacaggttcagcatcccctcacgaaggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgttgttaaatctactcctatctttcacagacaggttcagcatcccctcacgaaggc 504
Query: 305 agctgcaactggaggaagtacattccatggcatggagtagaagctacccatcgtagaac- 363
|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 505 agctgcaactggag-aagtacattccatggcatggagtagaagctacccaccatagaaca 563
Query: 364 catcacataggggatcgttgctaccaccccctaatcagtcagg 406
||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 catcacataggggatcgttgcaaccaccccctaatcagtcagg 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_b18.g1 MSMg01no313_b18.g1 CHROMAT_FILE:
MSMg01no313_b18.g1 PHD_FILE: MSMg01no313_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:26 2005
(374 letters)
>mm_chr4_150288307_150289080
Length = 774
Score = 692 bits (358), Expect = 0.0
Identities = 370/374 (98%)
Strand = Plus / Minus
Query: 1 gtaaactgtcattttctggccagcccatttgcagcagtcggcagcaagcgcgtcccacct 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 574 gtaaactgtcattttctggccagcccatttgcagtagtcggcagcaagcgcgtcccacct 515
Query: 61 tcaagccgccttcttgccccggaagtccgcaaggtcgcggtactccgtaaccccagggtg 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 514 tcaagccgccttcttgccccggaagtccgcaaggtcgcggtactcggtaaccccagggtg 455
Query: 121 cccagggaccgcagtgtcctccccagaaactttccggcagcgaaccaggtcggagtgaag 180
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 454 cccagggaccgcagtgtcctccccagaaactttccggctgcgaaccgggtcggagtgaag 395
Query: 181 ctgcgcaagcgcactgagtcccgcaagagcagttcgcgcgcccgcccactacgattaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgcgcaagcgcactgagtcccgcaagagcagttcgcgcgcccgcccactacgattaggc 335
Query: 241 tcagccaatcgacggcagcgccctgacggaagtgagccgtgcgcctctggcggtcagccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcagccaatcgacggcagcgccctgacggaagtgagccgtgcgcctctggcggtcagccg 275
Query: 301 actcacttccggcaagcgttgctctgtgggaggcgttctgggtggtccacccccgagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actcacttccggcaagcgttgctctgtgggaggcgttctgggtggtccacccccgagaag 215
Query: 361 cgttcacagcgtcc 374
||||||||||||||
Sbjct: 214 cgttcacagcgtcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
