BAC Information

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BAC

Clone NameMSMg01-313C23
Chromosome4 (Build37)
Map Location 142,771,313 - 142,771,687
singlet/doubletsinglet
Overlap genePrdm2
Upstream geneEG665983, LOC546484, 6330411D24Rik, LOC666018
Downstream geneEG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313C23.T7 (MSMg01no313_c23.b1)MSMg01-313C23.TJ (MSMg01no313_c23.g1)
ACCAG435187AG435188
length1,1921,202
length of high quality
(start - end)
313 (493 - 805)375 (73 - 447)
definitionCHROMAT_FILE: MSMg01no313_c23.b1 PHD_FILE: MSMg01no313_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:35 2005CHROMAT_FILE: MSMg01no313_c23.g1 PHD_FILE: MSMg01no313_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTCATTGGNCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
TGTTTTGCTCTATTCTCCCTTAATTACCAAGTACTCCCTGGAAATTGTAT
TCGCCTCTGAGGTTTCCTTCTCCGGAAAGTTCCTGTTCAAGCTCTTGTCC
TGTAATCTGGTTCCGTTCCGTTTCCTGGCTTTCTTCCTGATTACAAGAGT
TTTCTTGGGACTGCTACACATTAAACACTTATCCCGAGGCTTTGTCAGGG
TCTTCTCACCGTAGGTCACCCTCCAGTAGTTTTGCACCTGGTATCTTTTT
TTTTAAAACTAGAAACAAATGTGGTCAGACCCACTGAGTTTTGGATTTAT
AATCTTATTTACTAATCTTGCCAAAGGCATGCTTCCTTACTTCTGTTCAC
AAAGTTAGCCTCCTTCTAACACAGTTTTTACCTCTCGTGCTGTGATTGTT
TTCTTTCCCCACCACCTCAACAAAATCTAGAAAACAAAAGAGATCTGAGT
CTCACCAATGCACTGTCTTGATCAGGTTGGCCTATGGGTATGTCTACGGG
GAATTATCTTGATTATATTAACAGAGGGGAGATGACCCGCCCACTGTGGG
TGGCACCATTCCCTAGGCTGAAGAATCTGAACTGTATAAGAAAGGGGGTC
ATCTAGCTAGCTCAGTGGGTAAGGGCACTTGCCTGACAATCTGAGTTCAA
TTCCTGGGAACTACATGGTAGAAGTCCCACAAATTACCCTCTGACCACAT
GCATACAATGACATGTGCACATGTGCACACATACAAAAAAGTGGCAAAAA
TTGAAGGGGGAGGCCTATTGAGTTATCCTCTAATTCATTGCTCCTCGTCT
TTTTATTGTTCACCTCCTTTTCCCATATTCTTCACTTTCTTCTACTGTCA
TCTTCTTATAGTTTTACTCTTTAACCTCTCATTTTTTTCCTTTCTCTTTC
TTTCTCTCATTACTTTTTTCTTCATACTTATTTTTTTCCTCTCTTACTCA
TTTCCTCTTTCTTCTTCTCCCTATTCTTACTATTTTCCTAATTCTTACCT
TTTAATATCTCTATTTCCTTTTCTTTTCTCTCTTTTCTCTCTTAATTTTT
TCTCTTCTCCCTTTTCATTTTTCTTCATTCTCCTTTTCTACATTCTCATT
CTTTTCTCCTTACTTTCTTCTTTTTTTTCTTATCACTTATTC
NNNCCGCTCTGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACACTCTGGGCTATACAGAGAAAC
CCTTGTCTTGAAAAACAATCAAAAATTAAAAGTGCTTCATTGCTGTAAGA
AAATTAGTCTTTAGTTTTCAGTTTGATTTGGAAATGATTCTAAAAGCTAC
ATCCTGGTTTTCCTTGTTGATACCAGTATCCTTATTCCTTACATAAACGT
TTAATACTAATCTTATTTAAGACTCTGATGAATTCCAGCTAAGTTTTGAG
GCATAATTCTGTATTTCTGTCAACTCTGAGTTATTGTGATCTTTGCTGTT
CAGTGGCCTGATACACAACGGTCAGCTATTGCTCCTTGGAAAGTCCCACT
TGAAGTGAGGGCTAACAGTGAGCTGTCACTCTCTATAGAATGTCCAATCT
TTTTTTTTTCCCCCCCGCATACAGGAGGGAGGCAGCAAAAGAAGGGGCGG
ATGGCCTTCATGGAGTGTGGCAAAATTATCCTTTTAGGGTTGTAGTGTAT
TGCTGGTAGCCTTTGATTTAGTAACAGGTGGAAGCTGTGTTCTGCTGCCC
AGTTCTGTGGGAGCACTGTTAGAGAGCAGTGCAGTGCTGGGGACTTACAT
ATTTTGAAAGTGGATACAGGTGGCTGGAACAGACCAGACCCTGGTTCGAA
GGTTGCTAGTGTTTCACTACTAGGCTCAGCAAGTGATACAGCAGCTCCAG
ACCTGTCCCCTTCTGCTTTGTGCACTCCAGGTTCAGTAGAGCAATGCAAA
GCAAAATAAAAAACACTGCTGGTTTTCTTCCTTTTGCTATGACCCTTCTG
CTGTTTGCCTTGCAGAACACTGAGTCTGTGGCAGTCACTGAGACTCTGGC
TGAAGTACCTGAACACGTGCTTCGAGGACTTCCAGAGGAAGTAAGACTTT
TACCATCTGCGGCCGACAAACTCGGATTGGTGAATACTTCTTGTTGAGAA
GTCCGGTAACAAAGATAAACTGTTTTCTGGGGAAACCAGGATCTTCCAGG
TAGCCTTTATTCCAAAAAAGGAAACTTTGCCCCCTCCTTTAAAAAATAAG
GGGGGTGTGGGCCTTTCTCCCTAAAAAACCCCGGGAACAATGGGTTTTTA
AAGAAAAACCACCTTCCTCTTTATATTTATCACCAATTGGGGGCTCACGG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_c23.g1 MSMg01no313_c23.g1 CHROMAT_FILE:
MSMg01no313_c23.g1 PHD_FILE: MSMg01no313_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:35 2005
         (375 letters)



>mm_chr4_142771070_142771844
          Length = 775

 Score =  679 bits (351), Expect = 0.0
 Identities = 369/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacactctgggctatacagagaaacccttgtcttgaaaaacaatcaaaaattaaaag 60
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 618 caggatactctgggctatacggagaaacccttgtcttgaaaaacaatcaaaaattaaaaa 559

                                                                       
Query: 61  tgcttcattgctgtaagaaaattagtctttagttttcagtttgatttggaaatgattcta 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 558 tgcttcattgctgtaagaaaattagtctttagttttcagtctgatttggaaatgattcta 499

                                                                       
Query: 121 aaagctacatcctggttttccttgttgataccagtatccttattccttacataaacgttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 aaagctacatcctggttttccttgttgataccagtatccttattccttacataaacattt 439

                                                                       
Query: 181 aatactaatcttatttaagactctgatgaattccagctaagttttgaggcataattctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aatactaatcttatttaagactctgatgaattccagctaagttttgaggcataattctgt 379

                                                                       
Query: 241 atttctgtcaactctgagttattgtgatctttgctgttcagtggcctgatacacaacggt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atttctgtcaactctgagatattgtgatctttgctgttcagtggcctgatacacaacggt 319

                                                                       
Query: 301 cagctattgctccttggaaagtcccacttgaagtgagggctaacagtgagctgtcactct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagctattgctccttggaaagtcccacttgaagtgagggctaacagtgagctgtcactct 259

                          
Query: 361 ctatagaatgtccaa 375
           |||||||||||||||
Sbjct: 258 ctatagaatgtccaa 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)