BAC Information

Click to search

BAC

Clone NameMSMg01-313E08
Chromosome4 (Build37)
Map Location 52,544,265 - 52,715,667
singlet/doubletdoublet
Overlap gene4930547C10Rik
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883
Downstream geneLOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313E08.T7 (MSMg01no313_e08.b1)MSMg01-313E08.TJ (MSMg01no313_e08.g1)
ACCAG435249AG435250
length1,2931,279
length of high quality
(start - end)		679 (130 - 808)408 (74 - 481)
definitionCHROMAT_FILE: MSMg01no313_e08.b1 PHD_FILE: MSMg01no313_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:46 2005CHROMAT_FILE: MSMg01no313_e08.g1 PHD_FILE: MSMg01no313_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,544,265 - 52,544,943)(52,715,291 - 52,715,667)
sequence
NCCGACTTTNNNNNNNNTCAATGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTCCCATGGAGCAAGCCTTAAAGCCAATCAGAAAG
GCAGTTGGTTAACCCCATAACACATCTGCCACTATTGCACATCTTGCCCA
CAGGCCAGTGTTCTAACGTGCAAATAGTGATAGACTGTTGACATTTTTTC
TCCCCAGCTTTCAGTACTGTGAAAACTAGCCAGTCAGAATGATTCAGCAT
ATTTCTAGGTACAAGTCTAAAAGCCCCTAGCATGTCAGTGCCTTTCAGGA
GATAGTAGAGTTTGAGAGGGAGCAATGTATAGGAAATGAAGGGAATACCC
TTCGTGTCTTTCATCCAGTGCTGTATGACAGAGACATTTGGTTCTCAGCA
TAGGAGGTGCCTTCAGTGTTTCTACAAGAAATGGCTACACCACCTCCTGG
TGAGATAGAAGTGTGTGACATGTACTAGGGGAGATTTGGACAGTCAGAAG
AAGGCATGAGATGAGGGCCTGTTGCTGCTTTTTGAACAGCCAGGGTTAGC
AATCAAGCTTCCATTTGTGTGCAGGAGTGGTTCTGTACCGTACCTGCATT
GTTCAAGCATTTTCATGTCTATACATAATAGTGAGCTTCTTACTATATTA
AATAAATATAATAAAGTTATTCAAAGAGCCTAGAGCTGCATATTTAAATA
ATCTTCTCCCTGTATATTACCACCACATTTCCAAGGCCTATCTAAAGTAG
TTCTATTGATTCATTGCAACCTGTATCACTCCTGTATCATAACATTTCAT
ACACTAACATTTCATACACTCACCAGCATGTATAAAACATATCCTATTTG
TGATATATCTCACATGTATATATGATATATACATGTATATATGATATATA
CAGGAAAGTATTCTTGTACTTGAATAAAAACTCACCCAATTGATATCCTA
AAGAAAAAACGTGAGTGTCTTATAAAAAATATATCCAATCATTTTGATTC
TAGACAAAAATTTTGTAAAATTCCCCCTTTCTTTAAAATACATTGACTAA
ATCTAATAACACAAATCTTTTTAGCAATCTGACTATGCTTTTCCACTCGT
CCTCTCCTTTTTTTTAATTAAATATTTCTTTCTATTCTTCTTACAAAAAT
TCTCTTCTTCTTTTATTATTTTTTTTTCCCCAACTTTTTTACTCAGATAT
TTCCTCTCTCATCTTTATATCATATACCTACTTAGTTTCTTTCCTTTATC
CTACACTATAACTTCCTTCATTCTCACATTTCAATCCCAAACT

NNGGTGTAGATGGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGACTTTCGAAAACTTTTCCCGTCC
CAATTGCAAAAGAAATACCCCTTGCCCCCGCAATTTGTTACCTATACGAG
AGAAATCGGATTGCTCCAACTCTGGTATTCTTCCTCGTTATTCCCTTTTG
TAGCTCTTAATGTCGTTTTGAAAAGGCCAGGTGAGATTTGAACATTTGAA
CATGCTGCTTGGTTTGAGCCATCTCTCCTTAACTGAGCATAAAATTAATA
GAGGCTGAGTTTGAGTCTCTTCCCATATTTCTTTTACAATTTCCCATGGC
TCATATTTCACCTGCCATATCAAAATGTTGTGTAAGAGAATTTCTGTATT
CTTTACATCTCTGACAGTTTTCTTATAAAGAATAAACAACAGTTTCTCAC
TTTTTTTTTGCCCCCCCCCTCTTTCTGAAATTCTGACAAAAAAAAAAAGG
GGTCNCAGCNNCCACATTTTTGATGAGTGCACACCATCCTTCATCACCCT
GTGAAAAGAGAGTACAACTTCTATATGGAAGTCTTTCCTCTGAATTTTTG
AACTTCAGAAAAGAGCTGTGCTGGTGTGCACATCCTAAGATCCGAGTTCC
CTCAAGACTATGTTGTTATCAAGACTTAGCAACAAATTGGTCCCTCTGAA
CTTGGCTGCAGGCAGAGAGAAAGAAGACAAAAAGTTTCTGGTAAAAAATG
CATTAATCTGAAAGTAAGAAACCTCTGGACAGGAATTTTTACAATTCTGA
AGTGAATCTCCCATGATCTTGGGAATGAATATGAAGCTCACTGAGAAGAG
TGGCAGAAAATATATGTTCATAAAAGCATATTTTCTCCCTCCCTAGTCTC
ACAATTAAATTACATTTCTTTTCCAGGTACTGAAGTATGCCCGTTGCAAC
ATGAATGTATTAATGGATATAACTCCCCAGCTGGCTTATTGAAACCCCCA
GTGGGATTACTTTGAAATCTTATATCTTTCTCTTTCCTTGTCGCCCAAAA
AAGAAAAACTATTGGTAATTTTCAGTGTCTAATTAACAATGAATTTCTTT
GTTTTATATATTTCTGTTTTCTGTGTTATAAACATATCAATTTTCCCTTT
TTTTCTCCTTAATATGATTTCTTTTATCAAATATCCTTTTTTCTCTTACA
TTCATAGCATTTAATTTCATTCTTCTTCCTAATTCCTCTCTTCCATCTTA
CATTATATATTATTATATCTTTCTCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_e08.b1 MSMg01no313_e08.b1 CHROMAT_FILE:
MSMg01no313_e08.b1 PHD_FILE: MSMg01no313_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:46 2005
         (679 letters)



>mm_chr4_52544065_52545143
          Length = 1079

 Score = 1305 bits (675), Expect = 0.0
 Identities = 678/679 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactattgcacatcttgcccacaggccagtgttctaacgtgcaaatagtgatagactgtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cactattgcacatcttgcccacaggccagtgttctaacgtgcaaatagtgatagaccgtt 260

                                                                       
Query: 61  gacattttttctccccagctttcagtactgtgaaaactagccagtcagaatgattcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacattttttctccccagctttcagtactgtgaaaactagccagtcagaatgattcagca 320

                                                                       
Query: 121 tatttctaggtacaagtctaaaagcccctagcatgtcagtgcctttcaggagatagtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttctaggtacaagtctaaaagcccctagcatgtcagtgcctttcaggagatagtaga 380

                                                                       
Query: 181 gtttgagagggagcaatgtataggaaatgaagggaatacccttcgtgtctttcatccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgagagggagcaatgtataggaaatgaagggaatacccttcgtgtctttcatccagt 440

                                                                       
Query: 241 gctgtatgacagagacatttggttctcagcataggaggtgccttcagtgtttctacaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtatgacagagacatttggttctcagcataggaggtgccttcagtgtttctacaaga 500

                                                                       
Query: 301 aatggctacaccacctcctggtgagatagaagtgtgtgacatgtactaggggagatttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggctacaccacctcctggtgagatagaagtgtgtgacatgtactaggggagatttgg 560

                                                                       
Query: 361 acagtcagaagaaggcatgagatgagggcctgttgctgctttttgaacagccagggttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagtcagaagaaggcatgagatgagggcctgttgctgctttttgaacagccagggttag 620

                                                                       
Query: 421 caatcaagcttccatttgtgtgcaggagtggttctgtaccgtacctgcattgttcaagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatcaagcttccatttgtgtgcaggagtggttctgtaccgtacctgcattgttcaagca 680

                                                                       
Query: 481 ttttcatgtctatacataatagtgagcttcttactatattaaataaatataataaagtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttcatgtctatacataatagtgagcttcttactatattaaataaatataataaagtta 740

                                                                       
Query: 541 ttcaaagagcctagagctgcatatttaaataatcttctccctgtatattaccaccacatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcaaagagcctagagctgcatatttaaataatcttctccctgtatattaccaccacatt 800

                                                                       
Query: 601 tccaaggcctatctaaagtagttctattgattcattgcaacctgtatcactcctgtatca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tccaaggcctatctaaagtagttctattgattcattgcaacctgtatcactcctgtatca 860

                              
Query: 661 taacatttcatacactaac 679
           |||||||||||||||||||
Sbjct: 861 taacatttcatacactaac 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no313_e08.g1 MSMg01no313_e08.g1 CHROMAT_FILE:
MSMg01no313_e08.g1 PHD_FILE: MSMg01no313_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:46 2005
         (408 letters)



>mm_chr4_52715091_52715898
          Length = 808

 Score =  683 bits (353), Expect = 0.0
 Identities = 371/377 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgactttcgaaaacttttcccgtcccaattgcaaaagaaataccccttgcccccgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||
Sbjct: 577 cttgactttcgaaaacttttcccgtcccaattgcaaaagaaataccccttgcatctgtaa 518

                                                                       
Query: 61  tttgttacctatacgagagaaatcggattgctccaactctggtattcttcctcgttattc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttgttacctatacgagagaaattggattgctccaactctggtattcttcctcgttattc 458

                                                                       
Query: 121 ccttttgtagctcttaatgtcgttttgaaaaggccaggtgagatttgaacatttgaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccttttgtagctcttaatgtcgttttgaaaaggccaggtgagatttgaacatttgaacat 398

                                                                       
Query: 181 gctgcttggtttgagccatctctccttaactgagcataaaattaatagaggctgagtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gctgcttggtttgagccatctctccttaactgagcataaaattaatagaggctgagtttg 338

                                                                       
Query: 241 agtctcttcccatatttcttttacaatttcccatggctcatatttcacctgccatatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agtctcttcccatatttcttttacaatttcccatggctcatatttcacctgccatatcaa 278

                                                                       
Query: 301 aatgttgtgtaagagaatttctgtattctttacatctctgacagttttcttataaagaat 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 277 aatgttgtgtaagagaatttctgtattccttacatctctgacagttttcttataaagaat 218

                            
Query: 361 aaacaacagtttctcac 377
           |||||||||||||||||
Sbjct: 217 aaacaacagtttctcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |