Query= MSMg01no315_e05.b1 MSMg01no315_e05.b1 CHROMAT_FILE:
MSMg01no315_e05.b1 PHD_FILE: MSMg01no315_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:40 2005
(368 letters)
>mm_chr4_85180212_85180981
Length = 770
Score = 621 bits (321), Expect = 0.0
Identities = 352/363 (96%), Gaps = 2/363 (0%)
Strand = Plus / Minus
Query: 7 gaattccttgttcacggcgtttcttcacagcaatcaagcagtgactaaggcagctcctgt 66
|||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 gaattccttggccatggcgtttcttcacagcaatcgagcagtgactaaggcagctcctgt 562
Query: 67 tccagcagctgatggaagagtggccaatggccctggaagtaccagcttagctctcagagg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagcagctgatggaagagtggccaatggccctggaagtaccagcttagctctcagagg 502
Query: 127 ctacagaaaccacaatgtagtaggacaatttcaaggaagagacatggaactctgagtgac 186
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 501 ctacagaaaccacaatgtagtaggacaacttcaaggaagagacatggaattctgagtgac 442
Query: 187 caacagactccccaaatctcacccagctagcatttggccatgcgaagtaatctgcttagg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacagactccccaaatctcacccagctagcatttggccatgcgaagtaatctgcttagg 382
Query: 247 ggaaaattttaaaaaaaa--tgtccagcaggaagggaatgctgccagagatggtcaaaga 304
|||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ggaaaaattaaaaaaaaaaatgtccagcaggaagggtatgctgccagagatggtcaaaga 322
Query: 305 ggctcacaagtggaccggagtcaaatgccattcaaatactccagtctgcagggatgctga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctcacaagtggaccggagtcaaatgccattcaaatactccagtctgcagggatgctga 262
Query: 365 tga 367
|||
Sbjct: 261 tga 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 770
Length adjustment: 9
Effective length of query: 359
Effective length of database: 761
Effective search space: 273199
Effective search space used: 273199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_e05.g1 MSMg01no315_e05.g1 CHROMAT_FILE:
MSMg01no315_e05.g1 PHD_FILE: MSMg01no315_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:41 2005
(340 letters)
>mm_chr4_85068875_85069615
Length = 741
Score = 619 bits (320), Expect = 0.0
Identities = 335/342 (97%), Gaps = 5/342 (1%)
Strand = Plus / Plus
Query: 1 ttaggcacccatgcccatcttttggattccttgcattcctttggatgtgagactcccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggcacccatgcccatcttttggattccttgcattcctttggatgtgagactcccatt 260
Query: 61 gtatgccctcctctggcctcgtaagggaaaccaagcacataactttcttacttagatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgccctcctctggcctcgtaagggaaaccaagcacataactttcttacttagatatt 320
Query: 121 tttcctttgagaaaagtaacaatgatatcaaggtaaaatctgtaaaaagtaaatagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctttgagaaaagtaacaatgatatcaaggtaaaatctgtaaaaagtaaatagagtt 380
Query: 181 ttgcttaatagtcgtgaatgtc---gggatgatgtgttggacatttggatatagggggaa 237
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcttaatagtcgtgaagg--aaagggatgatgtgttggacatttggatatagggggaa 438
Query: 238 aagagcctaagactagcatagatgaatggcccaaggggaaaggcagagcctagaaaataa 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagagccaaagactagcatagatgaatggcccaaggggaaaggcagagcctagaaaataa 498
Query: 298 ctctaagatggatatgcccaaatcctgcctttcatgcaaaac 339
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctctaagatggatatgcccaaatcctgcctttcatgcaaaac 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space: 242292
Effective search space used: 242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
