BAC Information

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BAC

Clone NameMSMg01-317D01
Chromosome4 (Build37)
Map Location 21,588,516 - 21,588,818
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317D01.T7 (MSMg01no317_d01.b1)MSMg01-317D01.TJ (MSMg01no317_d01.g1)
ACCAG437330AG437331
length779743
length of high quality
(start - end)
321 (44 - 364)618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no317_d01.b1 PHD_FILE: MSMg01no317_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:09 2005CHROMAT_FILE: MSMg01no317_d01.g1 PHD_FILE: MSMg01no317_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTCTTGTCGATAAGCTAACTGCCTCAGGCATTTCGTTATAGTAAT
GTACAACCTTCTAATACAGTAACTCTGCACAAGCCCTGAAGCTAGCATAG
AGAAGAACAAGAGTATGTTTCCTTCTGATGTTCCTTCACTAGAATGCTGG
CCCTGCTGAGTTAAAGGGTGACATTCCAGTTCTTAGCAGAGCTTTTATCC
CAGATGTGCAGTCATAAAGCACAAAAAGTTTGAAGAATGAACTTAAGATG
GAGTGTTGTAAAGATATGTGGAAAATGTGAAGGATCACTTGGGGTGGGGG
TGGGGGTGGGGTTTCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNCCNNNN
NNCCCCNCCCCCCCCTTGTTCCCCCCCCCCNCTGTTCTTTTCTCTCTCTT
TTTGTGCGTGTGCTCGCGTCCCCGTTTGTTGCTCTTGTTTTCTCTCCTTC
CTCGCCCCTCCCGTTGCGCCCGCCTTTGTTGTCCGCCTTTTCCTTTCTCC
TGCTTTGCCCTCTCCTTCCCCCCTTCTCTCGTTGGTTTCTTTTGCCTCCC
CCCGCCCGCTTTTTTCCGGCCCCCTTTGGTTTCCCTTCCTTCCCTCCGCC
TTTCCCCCCTCTTCGCNGGTTGCTTCTTCTCCCCCCCCCCGCCGTGTTCT
GCTCGTTTCCTTTGTTTCCCTCCCCCCCCTCTTCCCCGTTTTCCTTTTTC
CCCCTCTCTTCCCGTTTTCTTTTGTTGCG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACATCCCACTCTCACCAAAAGACA
GATTATGGAAACAGAAACTAAACCAGGAAACTAACAGAAGTGATGAACCA
AATGGATTTAACAGATATCTACAGAACATTTCACCCTAAAACAAAAGAAT
ATACCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCATATAATC
AGTCATAAAACAAGCCTCAACCAATACAGGAAGATTAAAATAATCCCACA
TACTCTATCAGAGCACCACGGACTAAGGTTGGTCTTCAATAACAACAAAA
ACAATAGAAAGTCAACATACTCATAGAAAATAAATAACTCTCTACTCAAT
AATAACTTGGTCAGAGAAAAAATAAACAACTGCCAAACCCAGACACTATT
GCAGATGCCAACAAGATTTTGCTGACAGGAGCCTAATATAGCTGTCTCCT
GAGAGGCTCTGCCAGTGCCTGGCAAATAACAGAAGTGGATGCTCACATTC
ATCCACTAGACAGAGTGCAGGGTCCCCAATGAAGGAGCTAGAGAAAGTAC
CCAAGGAGCTGAAGGAGTTTGCAGCCCCATAGGAGAAACAACAATATGAA
CTAACCTGTACCCCCAGAGCTCCCTGGGACTAAACCACCAATCAAAGAAA
TTATGTGGTGGGAATTGTGTCTCTAACTGCATATGTAGCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_d01.b1 MSMg01no317_d01.b1 CHROMAT_FILE:
MSMg01no317_d01.b1 PHD_FILE: MSMg01no317_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:09 2005
         (321 letters)



>mm_chr4_21588242_21588962
          Length = 721

 Score =  507 bits (262), Expect = e-148
 Identities = 297/314 (94%), Gaps = 11/314 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttcttgtcgataagctaactgcctcaggcatttcgttatagtaatgtacaac 64
           ||||||||||||||  | |||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 577 gaattcttttcttg--g-taagctaattgcctcaggcatttcattatagtaatgtacaac 521

                                                                       
Query: 65  cttctaatacagtaactctgcacaagccctgaagctagcatagagaagaacaagagtatg 124
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 520 cttctaatacagtaactctgcac--------aagctagcatagagaagaacaagagtatg 469

                                                                       
Query: 125 tttccttctgatgttccttcactagaatgctggccctgctgagttaaagggtgacattcc 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttccttctgattttccttcactagaatgctggccctgctgagttaaagggtgacattcc 409

                                                                       
Query: 185 agttcttagcagagcttttatcccagatgtgcagtcataaagcacaaaaagtttgaagaa 244
           |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 408 agttcttagcagagcttttatcacagatgtgcagtcacaaagcgcaaaaagtttgaagaa 349

                                                                       
Query: 245 tgaacttaagatggagtgttgtaaagatatgtggaaaatgtgaaggatcacttggggtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgaacttaagatggagtgttgtaaagatatgtggaaaatgtgaaggatcacttggggtgg 289

                         
Query: 305 gggtgggggtgggg 318
           ||||||||||||||
Sbjct: 288 gggtgggggtgggg 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)