Query= MSMg01no317_d10.b1 MSMg01no317_d10.b1 CHROMAT_FILE:
MSMg01no317_d10.b1 PHD_FILE: MSMg01no317_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:11 2005
(289 letters)
>mm_chr4_117794253_117794941
Length = 689
Score = 400 bits (207), Expect = e-116
Identities = 277/325 (85%), Gaps = 43/325 (13%)
Strand = Plus / Plus
Query: 1 tggagggagctgggagtcttcagaaaggagctgttaaggtgtggttttaatattatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 172 tggagggagctgggagtcttcagaaaggagctgttaaggtgtggtcttaatattatgtgt 231
Query: 61 atatacacacacacacatata------tatacacacacaaacatatatgtgtatataat- 113
||| ||||||||||||| | | |||||||||||||||||||||||| |||||||
Sbjct: 232 atacacacacacacacacacacacacatatacacacacaaacatatatgtgcatataata 291
Query: 114 tgtatgtatatatagtgcgtatataatacacacacacacaca------------------ 155
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 t-tatgtatatatagtgcgtatataatacacacacacacacacacatatatatatatata 350
Query: 156 -----tatatatattaatcttgtttgtcttaatggtgttcagaggaaaaagttgtataca 210
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atatatatatatattaatcttgtttgtcttaatggtgttcagaggaaaaagttgtataca 410
Query: 211 tactttttattcagaaaaggtgacttctatgaaaac------tttttttcagaaagctga 264
|||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 411 tactttttattcagaaaaggtgacttctatgaaaacaaacaat------cagaaagctga 464
Query: 265 gtgcagacttgggaaaatcgtactg 289
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Sbjct: 465 gtgcagacttgggaaaatcgtactg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no317_d10.g1 MSMg01no317_d10.g1 CHROMAT_FILE:
MSMg01no317_d10.g1 PHD_FILE: MSMg01no317_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:11 2005
(240 letters)
>mm_chr4_117965744_117966383
Length = 640
Score = 456 bits (236), Expect = e-133
Identities = 239/240 (99%)
Strand = Plus / Minus
Query: 1 tatttatctgagggacaactgagacatagcatagagaaggggcttagtccaaggagctgg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatttatctgagggacagctgagacatagcatagagaaggggcttagtccaaggagctgg 381
Query: 61 agctcacacgggggccaaggggtggaaagaggcaggagaaggaaagacctagtattgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agctcacacgggggccaaggggtggaaagaggcaggagaaggaaagacctagtattgagc 321
Query: 121 cgtggaaatgaagagacgacgcggccaagtaattggagaacccgtggtcatggagggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cgtggaaatgaagagacgacgcggccaagtaattggagaacccgtggtcatggagggcag 261
Query: 181 gctaggccggtaaagccaggggaaagagctgtttccagaagtcagcgaaaaggaggtcga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctaggccggtaaagccaggggaaagagctgtttccagaagtcagcgaaaaggaggtcga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
