ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCTTATGATTTCCTGAATTATAATGGAGTTTTTGGCTGCAATATG
AAAATATGTGTCAAATATATTGTGCATAGTCTATGGGAGATAGTCTAGAG
GAAGAACTTATATCTGAGGGGATAATTATGAAACTGCCTGAAATATATAT
TCAAGAAAGTAAATCTGTTTCAGAATTATTTAAAAATGAAGAAAGACATT
AAATTGGTGGAGGGGGGTGGATTTAAGGAAGAGGTCCTCTGAAAGATTCA
GATGTTTTCCTCTAAATAAGAAATACCAATGACTAGGAAAAATTGTTTTT
AAAATGTTCAACATCCATAACCATCAGGGAAATGATTATTAAAACTAATT
TGAGATTGCATCTTATGCACGACACAATAGGTATCATCAAGTAATCAAAT
GACAATAAATGCTGTTAAGTGAGAGGAAATAAAATAATTTTACCTGCTGT
TTTGGGAGGAGAATCAGAAGCAGCCCCTATGGAAATCAGTATGAAATTTC
CTCCAAAAATTAAGGAGGAGAGTTTTTAAATAAACCCAGATGGTTCCGTC
CTGGAAGTATCCCGGGAAATTAATCCCATTTTTCCCCCCCTAAAAAAACC
CTTGGCCTTAAAAAAAAAAAAAAATAAAAATTTTTTGGCGTTAAAAATAT
TATTTATTTCTCCCCTCTTTTTCTTTTGG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCCCATGTGCAGGCACGGAATCC
TGACATTATTACTGATGCTATGTTGTGCTTGCAGAAAAGAGCCTGGCATG
GCTGGCTATGAGAGGTTCTACCAGCAGTTGACTGAGACAGAAGCAGATCC
TTACAGCCAACTATTAGACTAAGATGGAGAAACCCTATGGAAGAAATTGG
GGAAGGCTGGAAAGAGGATGGCAACCTGATAGGAATTACAATAGTGTCAA
GTAATGCAGACCCCTATGAGCTACCAGAGACTCAATCACCAGAGAAAGGG
CATATATACATGGGCTGGTCTGTAACCCCTAGCACTTATGTACCAGAGGA
CTGCCTTATCTGGCTTGAGCCGCAAAGTTGTGCCTAATCCTGTAGACTTG
GTTCAGGGAAGGGGGATACCTAAGTGTTGGTGGGTGAGGGAGCACCCTCT
CAGAGGCAAAGGTGAGGGAACATGGGGTGAAGATGTCTAGGAGGGGGGCC
CTGAGGGGTGCCACGTTTTGAATGTAAATAAATAATGCTCTTTTATAAAA
AGAAATGGAAGAAGGGGTATATCTGATGGAGGCATGGTATGGTATGGGGA
AAGGGGGTACCTCTGCAGCCCCATGCTGAGTCATTCCTTCCCCGTGAAGT
TATGCAGGGCAGGAGAGAGAAAGGGA

Query= MSMg01no317_k14.b1 MSMg01no317_k14.b1 CHROMAT_FILE:
MSMg01no317_k14.b1 PHD_FILE: MSMg01no317_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:42 2005
         (435 letters)



>mm_chr4_79292720_79293550
          Length = 831

 Score =  725 bits (375), Expect = 0.0
 Identities = 416/435 (95%), Gaps = 12/435 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatgatttcc----tgaattataatggagtttttggctgcaatatgaaaatat 60
           ||||||||||||    |    |||||||||||||| ||||||||||||||||||||||||
Sbjct: 453 gaattcttatga----caatgtgaattataatggaatttttggctgcaatatgaaaatat 398

                                                                       
Query: 61  gtgtcaaatatattgtgcatagtctatgggagatagtctagaggaagaacttatatctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtgtcaaatatattgtgcatagtctatgggagatagtctagaggaagaacttatatctga 338

                                                                       
Query: 121 ggggataattatgaaactgcctgaaatatatattcaagaaagtaaatctgtttcagaatt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 337 ggggataattatgaaactgcctgaaaaatatattcaagaaagtaaatctgtttcagaatt 278

                                                                       
Query: 181 atttaaaaatgaagaaagacattaaattggtggaggggggtggatttaaggaagaggtcc 240
           |||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||
Sbjct: 277 atttaaaaatgaagaaagacattaaattggt---gggggg-ggatttaaggaagaggtcc 222

                                                                       
Query: 241 tctgaaagattcagatgttttcctctaaataagaaataccaatgactaggaaaaattgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tctgaaagattcagatgttttcctctaaataagaaataccaatgactaggaaaaattgtt 162

                                                                       
Query: 301 tttaaaatgttcaacatccataaccatcagggaaatgattattaaaactaatttgagatt 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tttaaaatgttcaacatccagaaccatcagggaaatgattattaaaactaatttgagatt 102

                                                                       
Query: 361 gcatcttatgcacgacacaataggtatcatcaagtaatcaaatgacaataaatgctgtta 420
           |||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 101 gcatcttatgcaggatataataggtatcatcaagtaatcaaatgataataaatgctgtta 42

                          
Query: 421 agtgagaggaaataa 435
           |||||||||||||||
Sbjct: 41  agtgagaggaaataa 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 831
Length adjustment: 9
Effective length of query: 426
Effective length of database: 822
Effective search space:   350172
Effective search space used:   350172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)