BAC Information

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BAC

Clone NameMSMg01-318G05
Chromosome4 (Build37)
Map Location 8,653,844 - 8,654,208
singlet/doubletsinglet
Overlap geneChd7
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760
Downstream geneLOC666782, LOC100039584, 4933402J24Rik, Asph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318G05.T7 (MSMg01no318_g05.b1)MSMg01-318G05.TJ (MSMg01no318_g05.g1)
ACCAG438204AG438205
length733747
length of high quality
(start - end)
378 (41 - 418)304 (73 - 376)
definitionCHROMAT_FILE: MSMg01no318_g05.b1 PHD_FILE: MSMg01no318_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:33 2005CHROMAT_FILE: MSMg01no318_g05.g1 PHD_FILE: MSMg01no318_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATT
CTGTGTATCTCACGCAGCATTTGCGGTCTCACTTGCAAAGTTTCATCATC
AGCAACATCAAAAAGGTAAGACCCATAGGAAAGAGCTCCAAAGGCTTTTC
CCTCTGGGTAAAGTTTACTAAGGACCAGCCAACCAACCCGACATACTGCT
GGAGAACTGGGCACCCAGCAGTAAACACTGCAGGCAAATCCCTCTTTATG
TACTTTGATTACACCCTAGTAAAAAGTAAACAAACAAGTATAAAGAAGTC
ACAGGTGGACGGGGCTTTAACACAGGGGCTCTGGCCTTAAACTGGGTGTT
GGGAAGGCACCTGGCTGGGAAGATATGCTGAGGTATAGTGGAAGGCTGTG
AGAATGATGAGATGCCCACACCACCCCAATGTTCTAGAAGATAGAGAAAG
GGCAGGAACCTCCAGGACAGTATGGACTAAGAGCTCATCTTGAGGGAGGT
ATGGAGGGTAGACTAGGGCAGAAGGTGTCTTCCATGATGCATAGAGGCCT
CACACGAGGTAGACTAGGCCTTACACCCCGTCTCCGGAGAATGATCGGCC
CTGTTTTCTTTTTCATTCATCACCATCTTACTGTCCCGACTTTCCATGTT
GAGTGCTGTGTTTCCCTAGTTGTATTTGTTCCTTTCCCCCCTTTTTCACC
AACTTCATCCCATCACCCCTAACTGTATTGTTN
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCACTGGGAACAGAGAATTGAGGGTGC
ATATGATCAAGATACATTGTTTATGTTGTGTTTTATAAAACATGGTATGA
GGTTGCAGGAGAGGGTACCTTAGCTGGCCCATGCTGAGGCATCCCTCTGA
GATATCAGCCATAAGACAGACCTAATATAAAAGGAAGTTTATTTGGGACC
TGAGAAGGGGGTCTGGAGAAGGGAGAAGGGGCAGAGAAAGGAAGGGGACA
GAGAGGGGCAGAAAGAGAGAATAGAGAAAGAGGAGAAGAGGCCAGCTGGG
GGTACAAGGGAGGAAAGACAATAGATGAAGAGAGAGGAAAGATTGGGGCT
GGCTTCTTATAGTTCCTTAACAATCCCCCANNNATGTATCTGGCTTGTTG
CTAGCTAATTATTGACCATAGTCTGTAGGACTTGTTTGCAGTTTACTTAT
ACGATTTTTTCATATTTATAGACACTTTTTATCAAGATGTTTTACTCTGC
TTTTTCCACCGCTGCATACATATCACCCTGTTCTTTGCGCCTTGCTTTCT
CATAATCTTTTTTTTTGCCCTTATGTTTCTCCATTCCATCTTCTCTCCAA
TATATACTTCTTTGGTTCTTCTTACCGCCTTTTTTTTTTTCGCTCCTGCT
CTCGGCTTTTTTTTCTCTCCTCTCTTATTACTCTCCCCCCTTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_g05.b1 MSMg01no318_g05.b1 CHROMAT_FILE:
MSMg01no318_g05.b1 PHD_FILE: MSMg01no318_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:33 2005
         (378 letters)



>mm_chr4_8653844_8654620
          Length = 777

 Score =  654 bits (338), Expect = 0.0
 Identities = 359/366 (98%), Gaps = 1/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctgtgtatctcacgcagcatttgcggtctcacttgcaaagtttcatcatcagcaa 65
           |||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaattctgtgtagcaga-gcagcatttgcggtctcacttgcaaagtttcatcatcagcaa 307

                                                                       
Query: 66  catcaaaaaggtaagacccataggaaagagctccaaaggcttttccctctgggtaaagtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catcaaaaaggtaagacccataggaaagagctccaaaggcttttccctctgggtaaagtt 247

                                                                       
Query: 126 tactaaggaccagccaaccaacccgacatactgctggagaactgggcacccagcagtaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tactaaggaccagccaaccaacccgacatactgctggagaactgggcacccagcagtaaa 187

                                                                       
Query: 186 cactgcaggcaaatccctctttatgtactttgattacaccctagtaaaaagtaaacaaac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cactgcaggcaaatccctctttatgtactttgattacaccctagtaaaaagtaaacaaac 127

                                                                       
Query: 246 aagtataaagaagtcacaggtggacggggctttaacacaggggctctggccttaaactgg 305
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aactataaagaagtcacaggtggacggggctttaacacaggggctctggccttaaactgg 67

                                                                       
Query: 306 gtgttgggaaggcacctggctgggaagatatgctgaggtatagtggaaggctgtgagaat 365
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 66  gtgttggggaggcacctggctgggaagatatgctgaggtatagtggaaggccgtgagaat 7

                 
Query: 366 gatgag 371
           ||||||
Sbjct: 6   gatgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 777
Length adjustment: 9
Effective length of query: 369
Effective length of database: 768
Effective search space:   283392
Effective search space used:   283392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)