BAC Information

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BAC

Clone NameMSMg01-318K09
Chromosome4 (Build37)
Map Location 40,704,315 - 40,704,996
singlet/doubletsinglet
Overlap geneSmu1
Upstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1
Downstream geneLOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318K09.T7 (MSMg01no318_k09.b1)MSMg01-318K09.TJ (MSMg01no318_k09.g1)
ACCAG438390AG438391
length762713
length of high quality
(start - end)		44 (69 - 112)682 (32 - 713)
definitionCHROMAT_FILE: MSMg01no318_k09.b1 PHD_FILE: MSMg01no318_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:52 2005CHROMAT_FILE: MSMg01no318_k09.g1 PHD_FILE: MSMg01no318_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAAATTGCGGCCCCAAACGACTCCTATATACAGAAAACCGCGGAATCC
TATCTCTCCCCAAAATCAGAGTGTAGAATCTGAAACCAGTCGAAACAGAA
CCTTACGGAAGCCCCCCTTTTTACGGGTAGGGGGGTTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTTTNTNNNNNNNTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTNTTTTCCCCCTCTTTTNNTNNTNNTNTNTTNTTTNTTT
TTTTTTTTTTTTTTTTTCTCCCCCCCCCCCCCCCGNNNNNNNNNTNNNNN
NNNTTTNNCNNCCNCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCTCTTTCTCCCTTCTTCCCCCCCCCCCCCCCCCCTCCCC
CCCCTCTCCCCCCCTTTCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCC
CCCCTCCCCCCCCCCCCCTACCTCCCCCCCCTTCCCCTTCTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNCCTTCTTCCCCCCCC
CTCCCCCCCCCTCTCTCCCCCCTCTCCCCCCTCCCCCCCCCCTCCACCCC
CCCCCCCTTCCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCGTCGCTGTCCCGCC
TTCACTAAGTCTCACTCTTCTGACCCAATCAATATTCAAATTCTGTGTCC
ACAAAGAGGTTCTCTCTCTCTGCAAATTGCAAACCAAATCAATACACTAC
ACTGGATCTGATCAGATAGAAGAAGCAGCCGAGTCTTTGGGGTAACTAGT
GCTTGGACCAGAAGGAAGAGCTGAGGGACTGGCGGACACCCCGGCAGCGC
CGAGGGCGGTGTGGCTAGCAGAGGAAACCACAGTAGTCAGGTCTACTCGG
TGTGCCCCTGCACAGCCCGACGCCGGGGCCCAGGGGCTCCAGACGGCCCG
CCCCACGGCTGCTCTCTCGCGGGCCCATCTAAAGAGGGAGCCAACCCGGA
AAGTGCTTCGAGGCCGCAACCTCCGGCGCGCAGCTCCCCCTCCAACGTCC
TCCGACCACCCTCCACTCCACCCCACGGCACGCCGCGAACACGGCACGCC
GCGAACACGCCACGGCAGGACTCACTCGGAAGACTCGATTTCGATCGACA
TAGCGGTAACGCTCCGGGTCCAGGCCCCACTCAGCACACAGCCGGTCGCA
CAACGCCGCGCGACACTTCCGGCGGCCGCGCTGCGACACTTCCGCTCCGC
TAGGGTCTAAAGGGCGAAGGAAGAACACGCCCAGGTGGGCGGNGCGTGAG
GGGCGGGGCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_k09.g1 MSMg01no318_k09.g1 CHROMAT_FILE:
MSMg01no318_k09.g1 PHD_FILE: MSMg01no318_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:52 2005
         (682 letters)



>mm_chr4_40704116_40705197
          Length = 1082

 Score = 1212 bits (627), Expect = 0.0
 Identities = 668/682 (97%), Gaps = 1/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcgtcgctgt-cccgccttcactaagtctcactcttctgacccaatcaatattcaaa 59
           |||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 200 tcctcgtcgccgtccccgccttcactaagtctcattcttctgactcaatcaatattcaaa 259

                                                                       
Query: 60  ttctgtgtccacaaagaggttctctctctctgcaaattgcaaaccaaatcaatacactac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 260 ttctgtgtccacaaagaggttctctctctctgcaaattgcaaaccaaatcaatacaccac 319

                                                                       
Query: 120 actggatctgatcagatagaagaagcagccgagtctttggggtaactagtgcttggacca 179
           ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 actggatctaatcagataggagaagcagcagagtctttggggtaactagtgcttggacca 379

                                                                       
Query: 180 gaaggaagagctgagggactggcggacaccccggcagcgccgagggcggtgtggctagca 239
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 gaaggaagagctgagggactggcggacacccgggcagcgccgagggcggtgtggctagca 439

                                                                       
Query: 240 gaggaaaccacagtagtcaggtctactcggtgtgcccctgcacagcccgacgccggggcc 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 gaggaaaccacagtagtcaggtctactcggtgtgccccagcacagcccgacgccggggcc 499

                                                                       
Query: 300 caggggctccagacggcccgccccacggctgctctctcgcgggcccatctaaagagggag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caggggctccagacggcccgccccacggctgctctctcgcgggcccatctaaagagggag 559

                                                                       
Query: 360 ccaacccggaaagtgcttcgaggccgcaacctccggcgcgcagctccccctccaacgtcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccaacccggaaagtgcttcgaggccgcaacctccggcgcgcagctccccctccaacgtcc 619

                                                                       
Query: 420 tccgaccaccctccactccaccccacggcacgccgcgaacacggcacgccgcgaacacgc 479
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 620 tccgaccaccctccactccaccccacgccacgccgcgaacacgccacgccgcgaacacgc 679

                                                                       
Query: 480 cacggcaggactcactcggaagactcgatttcgatcgacatagcggtaacgctccgggtc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacggcaggactcactcggaagactcgatttcgatcgacatagcggtaacgctccgggtc 739

                                                                       
Query: 540 caggccccactcagcacacagccggtcgcacaacgccgcgcgacacttccggcggccgcg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caggccccactcagcacacagccggtcgcacaacgccgcgcgacacttccggcggccgcg 799

                                                                       
Query: 600 ctgcgacacttccgctccgctagggtctaaagggcgaaggaagaacacgcccaggtgggc 659
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctgcgacacttccgctccgttagggtctaaagggcgaaggaagaacacgcccaggtgggc 859

                                 
Query: 660 ggngcgtgaggggcggggcctc 681
           || |||||||||||||||||||
Sbjct: 860 ggggcgtgaggggcggggcctc 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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