BAC Information

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BAC

Clone NameMSMg01-319A07
Chromosome4 (Build37)
Map Location 21,742,194 - 21,742,541
singlet/doubletsinglet
Overlap geneUsp45
Upstream genePrdm13, Ccnc, 2610029I01Rik
Downstream gene4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319A07.T7 (MSMg01no319_a07.b1)MSMg01-319A07.TJ (MSMg01no319_a07.g1)
ACCAG438657AG438658
length743733
length of high quality
(start - end)
348 (70 - 417)281 (127 - 407)
definitionCHROMAT_FILE: MSMg01no319_a07.b1 PHD_FILE: MSMg01no319_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:18 2005CHROMAT_FILE: MSMg01no319_a07.g1 PHD_FILE: MSMg01no319_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGTATTTACGTACGCACATTCTTCACACATGACTGTGCTAGTTA
ATTCGCCAATAAAGATGTGACCCATGAAGTTCATCTTCACACCTTCCTTT
CCATAGGCTGTTAAAAGAACACATTTCTTCTAAATTAAAAAAATTCACAG
AACAACCACTGATCTGAGAGTGACATGCTACTACTCAAGTCATTTGGATA
AAATATAGCTTCTCTATTATATTCAATAATGTATTTTAATATATCACGTT
ACATCTTTCTCCTTTACAAGTTTGTAGAGGAACTGTGACTATTGAGTTCC
ATAATCTTTAAGAATTAACACCACGTAGGTCCCAGGAATTGAATTCCGCT
TGCCAGGGTTGGCAGCACCCCCCCCCACTCGCTGAGTCATCTTGCCAGTG
CAAATTATTTTTAATAGCAGTAACTACTAATTCATACTACACCCAAGCTG
CTCCTATTAACTTTTTTGACATTTCTGTATCTAATCTAAAGGTGGACAGG
ACAGGGAAAAATAACTGCTTCAAGGCTAAAGATTCCAGAATCACAGCAAT
AAAAGGGGGTATAAAATACAGTGTGTGAAGCATACAATAAGAACTCATCT
GTGGAAATAGTATTAACACACTTTCCCCCGTGGCTTGGGGATTACTTTGC
AAGTTGGAAATCATTTGAATTTACGGAGTGCTTTATAAATCCG
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAGCATCCTTAGTCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCC
TCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCACTC
TGGAAATCAGTTCCTCAGAATATTGGACATAGTACTAACGGAGGATCCGA
AATACCTCTCCTGTTTATATATCCAGAAGATGTTCCAACCGGTAAGAAGG
ACACATGCTCCACCACGNCCCCTCCACCCTTTTTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATAGG
GTACATTTACAAAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGTCAATGGATGGACCTGGAGGGCATCATTCTGAGTTGA
GGTTATCCAATCCCCAATGACCTCCATTGATATGTATTCCCTGATTACTG
TATATTAACCCCTTAAATTATATAACCCCAGATTTAGTTTATAATTTTGC
TTAACCATTGATATTCGTTATTTATTTTACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_a07.b1 MSMg01no319_a07.b1 CHROMAT_FILE:
MSMg01no319_a07.b1 PHD_FILE: MSMg01no319_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:18 2005
         (348 letters)



>mm_chr4_21741994_21742741
          Length = 748

 Score =  603 bits (312), Expect = e-177
 Identities = 339/348 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacattcttcacacatgactgtgctagttaattcgccaataaagatgtgacccatgaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct: 548 gcacattcttcacacatgactgtgctagttaattcgccaataaagatgcgatctatgaag 489

                                                                       
Query: 61  ttcatcttcacaccttcctttccataggctgttaaaagaacacatttcttctaaattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttcatcttcacaccttcctttccataggctgttaaaagaacacatttcttctaaattaaa 429

                                                                       
Query: 121 aaaattcacagaacaaccactgatctgagagtgacatgctactactcaagtcatttggat 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaattcacagaacaaccactgatccgagagtgacatgctactactcaagtcatttggat 369

                                                                       
Query: 181 aaaatatagcttctctattatattcaataatgtattttaatatatcacgttacatctttc 240
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 368 aaaatatagcttctctattatatccaataatgtattttaatatatcacattacatctttc 309

                                                                       
Query: 241 tcctttacaagtttgtagaggaactgtgactattgagttccataatctttaagaattaac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcctttacaattttgtagaggaactgtgactattgagttccataatctttaagaattaac 249

                                                           
Query: 301 accacgtaggtcccaggaattgaattccgcttgccagggttggcagca 348
           |||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 248 accatgtaggtcccaggaattgaattccacttgccagggttggcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)