BAC Information

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BAC

Clone NameMSMg01-319C10
Chromosome4 (Build37)
Map Location 54,475,780 - 54,476,016
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319C10.T7 (MSMg01no319_c10.b1)MSMg01-319C10.TJ (MSMg01no319_c10.g1)
ACCAG438754AG438755
length790725
length of high quality
(start - end)
237 (124 - 360)236 (121 - 356)
definitionCHROMAT_FILE: MSMg01no319_c10.b1 PHD_FILE: MSMg01no319_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:27 2005CHROMAT_FILE: MSMg01no319_c10.g1 PHD_FILE: MSMg01no319_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATCTATGTCCAGAGCCTCTGAACTATTTAAAAACATGCAGATTGAA
TCCATCTGAGCTTTCAGTCCGCAGGCTTGTTTGTATGCATATTTCACTTT
CTTGGTCATTGGAAGCATTAAGCCTGTTGCTTCTTTTCTATTTACCAGTC
TTCAGCTGTGTGCAGCTCAGAGAGAATAGGGGAAAGAATAAATGAAAAAC
TGTGTTTGCTGAAGGCTCATAGATGCACCTTACTCAATACTCCTACATTT
CCATTTTTCCAATAAGAAATTTAATCTTTAGTATGAACGATGCTCTTTTG
GGTTCACAGTTTTGTATGTGTGCGCCCCCCCCCGGGGGGNNNNANNNNNN
NNNNNNNNNNTTTTTTCCCCCCCCCCTTTAAAAAAAAAAAAATTTTGTGG
TTGGGGGCTTTTTATTACATTCCACCTATAATTTATTTCTATTTTTTTCC
CCAAGATTTCCTTTACATTTTCCCAATTATTCTATCATTTCACCTCCCTT
ATTATTTTTCCCTTTTAATATTATTTCATCATTCTTTCTTATCTATTATT
TACATTTTTATTTATATTATCTTAAACCATATCTCAATATCAATAAAAAT
CCATTACATTATTATCCTCCCCTATCTTCTTTATATATCCCTTTTTTTTC
TCTTATATCTTATCTTTTTACTCTTTATTCATCCCCTCCTATTACCCCCT
TTACTCTATATACCTTACCCTTTCTACTACACTCACTTAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTATTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAAT
ACCTCTTTTGTTTATATATCCACAACATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTACCCCCCCCACCAAACTTATTTATAATAGCCAGAAACTG
GAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
TACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCTAGATATAAGATACAATTTCCTAAAC
CCATGAAACTCACGAATAATGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_c10.b1 MSMg01no319_c10.b1 CHROMAT_FILE:
MSMg01no319_c10.b1 PHD_FILE: MSMg01no319_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:27 2005
         (237 letters)



>mm_chr4_54475580_54476216
          Length = 637

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcttgtttgtatgcatatttcactttcttggtcattggaagcattaagcctgttgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcttgtttgtatgcatatttcactttcttggtcattggaagcattaagcctgttgcttc 260

                                                                       
Query: 61  ttttctatttaccagtcttcagctgtgtgcagctcagagagaataggggaaagaataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctatttaccagtcttcagctgtgtgcagctcagagagaataggggaaagaataaat 320

                                                                       
Query: 121 gaaaaactgtgtttgctgaaggctcatagatgcaccttactcaatactcctacatttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaaactgtgtttgctgaaggctcatagatgcaccttactcaatactcctacatttcca 380

                                                                    
Query: 181 tttttccaataagaaatttaatctttagtatgaacgatgctcttttgggttcacagt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttccaataagaaatttaatctttagtatgaacgatgctcttttgggttcacagt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)