BAC Information

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BAC

Clone NameMSMg01-319C22
Chromosome4 (Build37)
Map Location 138,462,918 - 138,463,181
singlet/doubletsinglet
Overlap geneOtud3
Upstream geneEce1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e
Downstream geneRnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319C22.T7 (MSMg01no319_c22.b1)MSMg01-319C22.TJ (MSMg01no319_c22.g1)
ACCAG438777AG438778
length737740
length of high quality
(start - end)
264 (438 - 701)240 (125 - 364)
definitionCHROMAT_FILE: MSMg01no319_c22.b1 PHD_FILE: MSMg01no319_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:29 2005CHROMAT_FILE: MSMg01no319_c22.g1 PHD_FILE: MSMg01no319_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCCACG
TGGACATTCTCAAAGATGTCTTCTGGGGTTGGGGTGTATCCGCGCCTCAG
AACAGGGAGCTCTAGGCCTCAGCTGCAGTGTGACGTCACTCTAGCTGTGC
AGGGGAAAGGTATTTTCTTGTGATGTCACTGCATGGCTGAACACTGATTC
ATAAAAGCGTGAGCATCAAACAGGTGACAAATGGCTTAGGAGCAGAAATG
AAGAGTGTTGAATGCCAGGCCCACTGCCTTTCTCTCCCTACACAGGGCCA
GCTTTTCTGTCTGTCTGCCATGGTGTACTCAGTTTCTCAGGGACAACTGT
AGCGCCTTTGTTTTTATGCACCCCCACCCCGCCATTTGGAGGCATCCCTG
TAGCATTTGCTGGACCCCCACCCACAAAGAAACAATAAGTGGTGAGGACC
TGGTAACCTTTGCACTTGGCTTTATGTACAGGATTATTCTCACCCTCTGT
ACTGTGGCTCTGTAGAGTCGGCAGCATCTCTCCCCATCTGTATGGATACC
CAGATCAGAACTCTAGCTGTCGTCCTTAATGCCTTGTCTCCCATTTCCTC
CCACCTGCGCGTTCTGTGGGTCTTGGCCATTTTCCTCAGCAGTTTCCTCC
ACTTACCACCTGGGCTCAGTAGTTTTTATTGTCACTTGACATAACATAGG
GTCACCTGGGAATGGAGGCTCCTTCTTACCTCAGTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCCAAATACATGCCCTGGAAACAAACCGTGGGTATCTGGCCA
TTAAGAGATACAGTTTGTCCGTAGGAAACAAGGACATAAGGGAGCAGGGA
TGGGGGGCATCCTGCAATCCCAGCATTTGAGACATGGAGGCAGGAGAGGA
AGGAGAGGCAGGAGGCCAGGGGCAACCTCCACTATACGGTAAGTTCAAGG
CTAGCCTGAGCTACTTTAGACCCTGCCTTGAAAAATTTTTTAAACATTTT
TTAAAGGAAAATAAAACAGGTGAACACAGGGGTTGAGCTGAAAGGTGCTC
TCAAACCCTTCTCTCTCTTAAGAGCAGAGAGCCCCAGGATCCAGCCTAAA
CTCCCCTGTACCCTCTACCCCCCCCACCAAGAGAGACTGACTGGGGAACC
AAGTCATCTACCCAGGTCAGGCTGGGAAGTGAGCCGGGATCCTAGAAAAC
ACAGCCCAGGAGCCTCGCCTGGAATCTCCTCATTTGCACCAGGTCTGACC
TCTCCAGCAGGATGCAGGATGCACCCCTGTCTCAGAAGGTGGGGCACTAT
CAGAAAAATGGTGTGCACCAGTGCCACAAAGATGTCACTGGTTAAGATGG
CATCAAGAAATGGAAAGAGGATGTTCGGGACAGGGGGTCCAAGGGCACCC
AAATCCTTACCCCAATTTAGAAGCCTTTGGTCCTGTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_c22.b1 MSMg01no319_c22.b1 CHROMAT_FILE:
MSMg01no319_c22.b1 PHD_FILE: MSMg01no319_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:29 2005
         (264 letters)



>mm_chr4_138462718_138463381
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtgaggacctggtaacctttgcacttggctttatgtacaggattattctcaccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agtggtgaggacctggtaacctttgcacttggctttatgtacaggattattctcaccctc 405

                                                                       
Query: 61  tgtactgtggctctgtagagtcggcagcatctctccccatctgtatggatacccagatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgtactgtggctctgtagagtcggcagcatctctccccatctgtatggatacccagatca 345

                                                                       
Query: 121 gaactctagctgtcgtccttaatgccttgtctcccatttcctcccacctgcgcgttctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaactctagctgtcgtccttaatgccttgtctcccatttcctcccacctgcgcgttctgt 285

                                                                       
Query: 181 gggtcttggccattttcctcagcagtttcctccacttaccacctgggctcagtagttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gggtcttggccattttcctcagcagtttcctccacttaccacctgggctcagtagttttt 225

                                   
Query: 241 attgtcacttgacataacataggg 264
           ||||||||||||||||||||||||
Sbjct: 224 attgtcacttgacataacataggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)