Query= MSMg01no319_f10.b1 MSMg01no319_f10.b1 CHROMAT_FILE:
MSMg01no319_f10.b1 PHD_FILE: MSMg01no319_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:39 2005
(321 letters)
>mm_chr4_29460108_29460828
Length = 721
Score = 576 bits (298), Expect = e-169
Identities = 313/318 (98%)
Strand = Plus / Plus
Query: 4 ggaattcctgagactgccgtgagtggaagttttggagttgtttcctagtctctctctctt 63
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattcctgagactgctgtgagtggaagttttggagctgtttcctagtctctctctctt 263
Query: 64 tccatggcattactccaaggatcatcctttttttcttttataaatatataaaagaaaata 123
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccatggcattactaaaaggatcatcctttttttcttttataaatatataaaagaaaata 323
Query: 124 ttttcttttataaagaaaatcatagctcagaatcccatgccaagaacattacatttttgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttcttttataaagaaaatcatagctcagaatcccatgccaagaacattacatttttgc 383
Query: 184 tcaataattggtataatgtcttctggacagtattaatcttataagtggtcatgtttttct 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaataattggtataatgtcttctggacagtattaatcttataagtggtcatgtttttct 443
Query: 244 tctttttcactcacaaggaattttaaatttgtggttttagattttctgaaatggattatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctttttcactcacaaggaattttaaatttgtggttttagattttctgaaatggattatt 503
Query: 304 ttttacctaaaatatctt 321
||||||||||||||||||
Sbjct: 504 ttttacctaaaatatctt 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_f10.g1 MSMg01no319_f10.g1 CHROMAT_FILE:
MSMg01no319_f10.g1 PHD_FILE: MSMg01no319_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:40 2005
(343 letters)
>mm_chr4_29563391_29564133
Length = 743
Score = 507 bits (262), Expect = e-148
Identities = 293/304 (96%), Gaps = 2/304 (0%)
Strand = Plus / Minus
Query: 38 aaaaaccaaaaaaaaaaaaaaaattcattgcttcatcttcactgtaattttgctgttttt 97
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaaaa--aaaaaaaaaaaaaaaattcattgcttcatcttcactgtaattttgctgttttt 630
Query: 98 atgaatcatgatgtaaatatctgtgatttccaatggtcttagagactcctatgaaagtgt 157
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgaatcatgatataaatatctgtgatttccaatggtcttagagactcctatgaaagtgt 570
Query: 158 gggttgacctgaccgctaggttgaaaacaactactgtgcagcagaaacatctctaagact 217
|| ||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 569 ggattggcctgacctctaggttgagaacaactactctgcagcagaaacatctctaagact 510
Query: 218 atacaagcttctcagaggaatgaaatctgtcatgcttctatatggatctctgagattgtc 277
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 509 atacaagcttctcagaggaatgaaatctgtcatgcttctatacggatctctgagattgtc 450
Query: 278 actatccttgtaacacagataagcactgtcccttgcttgtggacaagcacttatggaggt 337
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actatccttgtaatatagataagcactgtcccttgcttgtggacaagcacttatggaggt 390
Query: 338 atca 341
||||
Sbjct: 389 atca 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
