BAC Information

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BAC

Clone NameMSMg01-319L04
Chromosome4 (Build37)
Map Location 20,385,558 - 20,385,905
singlet/doubletsinglet
Overlap geneE130310K16Rik
Upstream geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319L04.T7 (MSMg01no319_l04.b1)MSMg01-319L04.TJ (MSMg01no319_l04.g1)
ACCAG439142AG439143
length663731
length of high quality
(start - end)
111 (130 - 240)349 (67 - 415)
definitionCHROMAT_FILE: MSMg01no319_l04.b1 PHD_FILE: MSMg01no319_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:04 2005CHROMAT_FILE: MSMg01no319_l04.g1 PHD_FILE: MSMg01no319_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTCGGCGCTATACACTCCTATATTACAGACCGCGNATTCCGTTTACCC
TTTACATTAAAATGGGCAACAGTCTCCCATATGCANCCTGTTTCATACTA
ACTGACATGCACCCATGNNNNTAATCTAATTTAACGTCTGCCATGAAAAT
GTTATAATTACCCCNTTAAAACTGAATGTTTGACTGTCTCTACCATTTGA
ANTAATTACTTAATACTGTGAATCAATACTCCTTATAATTTTTANAAATA
ATCCACCTACCTATAGTAGGAGTTGAGGTTTACTACCTTCTATTTNACNN
NANANNANCGCATAAATTCCTGCCCCCACNNNNNAANCCCAATATTTTTG
TTTTTTTCCACTCTTTTTTTCTTCCCCCCTTTTTGNTTTTTTTTTTTTTG
GCCCCCCCCCTTTTTACAANNNTAAAACCCTTCCCCCCTGCCCTCCCCTT
TTTTTGTTTTTTAGGGAGGGACTACANAATNNNNAAAAAAACCAAAACAA
AATTTTTTTTCACACCCATAAATTCTTTTCAAATATTTTTGTTTTGTTTT
GTGTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCTCCCCCCCCCA
CCCNCCCCACCCCCCCCCCACCCCACCCACAATTATTATTTTTTGTTTTT
AAATGAAACTGAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCGAATTCATTGAGGCCCCAGGCTGCTCAAGGGGACTAT
GTATGTGAGGATTTAACCGAAGACTCTCATGAGCAACCCTGTCAGCTTAT
GTAAAATGACACTCAAAAAAGTACTATTATTGTCTTTAGGGAAAAAGCAG
TTTACATTTCTTTAAAAACTAAAATTCTAATAACCAAAAAAGTGAGGTGG
AACAAGTCAGTGAGAAACAATTGCATATAGGTTTTCTTCTGTGTGGATTA
CAATGAAGGGTGATGGGGCCATTATGCCTGACACTCCGATATTGCACATG
TGCAAGGCAGTATCCTCTCATCAAGGTCCCTTATCTCTAAAATGCAGATA
ATTTCTACTCTGGATTCCCCCACACAAACATAGCACCTGTATGAAGCAGG
CCATGATGAGTTAGTTCAATCCTGTTCTTGGAGCATTTTAGAAGGCTTTT
GATCCAAGCTCATAATTAAGATTGGATAAATTTTCATAGAATTGCCCTTT
TTTATGACTAAATTGATGTCCACAGAAAGTAATATGCATTCAGAATTCTG
TGAAAACTTGATAAATTTGACATTCTCTAAGATAATATATTAGTTTTTGA
ATGCCTCAAGAAAAATCATTTTAGAATAAATATTAGATTTAATATTTGGA
GAAATTCCTGGGAAAAAAACTTTAAAAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_l04.g1 MSMg01no319_l04.g1 CHROMAT_FILE:
MSMg01no319_l04.g1 PHD_FILE: MSMg01no319_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:05 2005
         (349 letters)



>mm_chr4_20385358_20386106
          Length = 749

 Score =  658 bits (340), Expect = 0.0
 Identities = 346/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcattgaggccccaggctgctcaaggggactatgtatgtgaggatttaaccgaagactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattgaggccccaggctgctcaaggggactatgtatgtgaggatttaaccgaagactc 260

                                                                       
Query: 61  tcatgagcaaccctgtcagcttatgtaaaatgacactcaaaaaagtactattattgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgagcaaccctgtcagcttatgtaaaatgacactcaaaaaagtactattattgtctt 320

                                                                       
Query: 121 tagggaaaaagcagtttacatttctttaaaaactaaaattctaataaccaaaaaagtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagggaaaaagcagtttacatttctttaaaaactaaaattctaataaccaaaaaagtgag 380

                                                                       
Query: 181 gtggaacaagtcagtgagaaacaattgcatataggttttcttctgtgtggattacaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggaacaagtcagtgagaaacaattgcatataggttttcttctgtgtggattacaatga 440

                                                                       
Query: 241 agggtgatggggccattatgcctgacactccgatattgcacatgtgcaaggcagtatcct 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtgatggggccattaagcctgacactccgatattgcacatgtgcaaggcagtatcct 500

                                                           
Query: 301 ctcatcaaggtcccttatctctaaaatgcagataatttctactctgga 348
           ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ctcatcaaggtcccttatctctaaaatgcagataatttctattctgga 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)