BAC Information

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BAC

Clone NameMSMg01-320L04
Chromosome4 (Build37)
Map Location 64,936,679 - 64,936,865
singlet/doubletsinglet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L04.T7 (MSMg01no320_l04.b1)MSMg01-320L04.TJ (MSMg01no320_l04.g1)
ACCAG439865AG439866
length730883
length of high quality
(start - end)
189 (127 - 315)53 (479 - 531)
definitionCHROMAT_FILE: MSMg01no320_l04.b1 PHD_FILE: MSMg01no320_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:16 2005CHROMAT_FILE: MSMg01no320_l04.g1 PHD_FILE: MSMg01no320_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGTACGGAGCCGCGGAAT
TCANAAAGTTTCTAAAAGGAACAGGTGTAGGCACATTGTGCCCATTTATT
AGAAAGCACACATTCTTGCTATATATATATCATTTTTTTCTTCATCAACT
TTTAACGGAGAGCGCTCTAGACATCCCTGCCTTACCTTTGGGCCAGCTGA
AGGCTTCATAACTTATTCTTCTGTAAACTAGTGAAAACTTTACAAGCTGA
TTCATAAGATGACTGGCATGTTTGAATGTGAACATATAGTACGAAGTTCT
GGATACAGAACTGGTTTTTTGAGAGCACTTCACATTCTGACATGGTCATT
AATAATTATTTATTGCACCTGTGCTGCCATTTATTATTGTGGTGTGGTCA
CTCCTTTACTTCCTCCATTTAAATCAATAATCTATTTTTCTTTCTTGTTC
CTTCCTCTTCCTCTCTCGNCTCCTTTCTGTTTCTTACTCCTTCCAGCCTC
CATGGTTGGCTTATTTGGAAACATGTAAAAAGTGTTCCATTTTAACTGAA
AAAAATAACTTAAAAAAAACTACCTAGGGGGGTCCTCCCTCCCGGGGGAA
AACCCCGCTGGGGGGGAATTCTTTAAACACTGGAACCCCCCCCCATTTGG
TAGGGGGCCAAAGGGACTTGAATAAAAAACCTCCCCCCCCCCCCCCCCCA
ATATAAACCTCTCGGGTCAAACCCCATTTN
NNNNCCGGGGNGGGNNNNNNNCCCGGCGGGGGNNNNCGGACGAAANNNGA
AAAAGAGGGATGAGGGGACGGGNGGGGGGGGGNNNGAATCGGGAATGGAG
GNGNNNNNGGGGNNNTAGCAGGGAGNGGGGGGNNNNNGGGGGNNNNNNNN
NNNNNNNNNNNGNNNNGGGATAANGCCGAAAAAAGGGGGGGGNNNNNNNN
NANNNNNNNGNNNNNNNNNNNNNNNNNNGGGGGNNGGGAGGGGGGGGGGG
GGGGGGGAGGNNGGGGNNGGNNGAGGGAAAGGGAAAGAGGAAAGAAGAAG
GGAGAGANAGATATTAATGAAAAGAAGGAGAGAGGGAGGAGGGGGGAGGG
GAGGAGGGAGGGGGGGAGGGGGGGGGGGGCGTAAGTAAGTTAAAGGGGAG
GGGAGAGGGGAGAGGAGGGGGAGGGGAGTTGGTGCGCCCCCCCCCGCCCC
GGGGGGGGGGGAGGGGGAGAGGGGGGAGGGGGGGGGGGCCAAAAAAAAAA
AAAAAAAAAANGGGGGGGGGGGGGGGGGGGGGGTTCGCGGAGGGAGGAAG
GAGAAGAGGAGGGGGGGGAGGGAGGGGAAAGGGGAGGCGAGGAGGAAGGG
AAAAGAGAAAGAAGGGGGAGAAGAGGGAGGGGAGAAAAGGGAGGAGGGAA
AGGAGGGGGAGAGGGAGGGGGAGAGGGGAGGGGGGGGGGGGGAGGGGGGA
GGGGGAGGGGGGAAGAGAGGGGAAAGGGAGAAAGAGGGGGAGAGGGGAAG
GGGGAGGGAGGGGAAGAGGAGAGGAGGGGAGGGAGAAAGAAGAGGAGGAG
GGGGGAAGAGAGCAAACAGGAAAGGGGAGGAGGAGGAGAAGGGGAGGAAA
AAGGGGGAGAGACGAGGGGAGGAAACGGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l04.b1 MSMg01no320_l04.b1 CHROMAT_FILE:
MSMg01no320_l04.b1 PHD_FILE: MSMg01no320_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:16 2005
         (189 letters)



>mm_chr4_64936479_64937066
          Length = 588

 Score =  340 bits (176), Expect = 2e-98
 Identities = 185/188 (98%), Gaps = 1/188 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatcatttttttcttcatcaacttttaacggagagcgctctagacatccctgccttacc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 387 atatcatttttttcttcatcaac-tttaacggagagcgctctagacatccctgccttacc 329

                                                                       
Query: 61  tttgggccagctgaaggcttcataacttattcttctgtaaactagtgaaaactttacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttgggccagctgaaggcttcataacttattcttctgtaaactagtgaaaactttacaag 269

                                                                       
Query: 121 ctgattcataagatgactggcatgtttgaatgtgaacatatagtacgaagttctggatac 180
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 ctgattcataagatgactgccatgtttgaatgtgaacatatagtatgaagttctggatac 209

                   
Query: 181 agaactgg 188
           ||||||||
Sbjct: 208 agaactgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space:   104980
Effective search space used:   104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)