AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCAAATCTAAAATCAACAGTTTTGGACTTAAATATCCAGACTAACC
ATAAATATTTATATTTACACCCAAGCTTTAATTTAAAAATGCCAAGTCTC
TTTTTAACTCTGTCAATGTCAATTCTTTGGTTATGCTTGTAATCCGAATT
TGCAATGGATGTTGTGGAGACATTTTAAAAAACAACTCAGTTTAAAATTA
TACATCTTGAAAAACAAATAGAAAATAGTAACTAAGATCAAAAACTATAA
AATTGCACATTGGTCTCACTTGACTCATGTGAGATTTCACTAGCCAATTC
CTCAAGGATTTTCTACACGCCCCCACCCCCATCAAAAGACTTATTCGACC
TAGAAACATGAGCAATCTGATGTATAATGTGCTGGGTCTGAGCCTCAGCT
GGGAATACTATGTGGATTACTTAGGTTTCTGGCCTGACAAACCTTACTAC
AATGTAAAGAGCTGTTTATAAAAAGAGTAGCTACAAGTGCGATAGCTCTT
TACTAAAAATATGTAGCCCTGAACGAGTTCAATCCATGTAAAAATTCTTG
CTTGGGTGTAAAGCCCTGCCAAGTCCCCATCTTTAGCTGCACAGCTATTG
GAGTTCATAGTTCCTATCTAAGACAGTTACTTTCCTTTGGGTGTTGGCTG
CCAGTAACAGATAGCTCATATTCCAATGCATGACCCTATAN

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGATTTTTTAGTACATATTTTAA
AAGAATAAACTCTCGTCTGAATACCACTGCACTTTAGCCAGCAGCAAACA
CATTTAACAAGATCAAGTACCCGGGCCAAGGTCATGATGACCAAAAGGCA
AGACTCAGACCCTACTGCCTAGAGTAGAAAGCAAGTTTCTAAGCACAAAG
TCGCTGTTTTTCTCTTTTACTCTTCACAACACTTGCCAAGCAAATTCAAT
ACAAGACAATTTATTCTGAGCTACAATTATAAATTACTTCAAAATGTGTG
TGTTTATTGTTGNCTGNATTACCCCTGACCCCCCCGGCACAATCAGCTAT
TTTTTTTTTTTTGGCTAATTATCCATTAAAAGAATCAGTCCACAAGGATT
CGTTAAGAATCTACTACAGTCAAGCCTCTGCTTGAGTCTACATATTTTGC
CATTCCTCCTGCCAAGAAATGCAGACGTGCATTCCCTCGTCAGGAAGCTT
ATTTCTTTGTAATCATTTTAGCTCAGGATGCACTTCCTTCCCACTTAAGA
AGTGAATAATTATAGTGGAGTCCAGGTTCTATATATAGCTAACAACCAAG
AGCATTTGGATCACACTTTTCTGTTTCCATTTTCCCTTTCCTTACAAATG
CCACATTATAGCATCCATAACATTACATTGTGGTTTATATN

Query= MSMg01no320_p14.b1 MSMg01no320_p14.b1 CHROMAT_FILE:
MSMg01no320_p14.b1 PHD_FILE: MSMg01no320_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:37 2005
         (303 letters)



>mm_chr4_77552429_77553131
          Length = 703

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtctgagcctcagctgggaatactatgtggattacttaggtttctggcctgacaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtctgagcctcagctgggaatactatgtggattacttaggtttctggcctgacaaacct 260

                                                                       
Query: 61  tactacaatgtaaagagctgtttataaaaagagtagctacaagtgcgatagctctttact 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tactacaatgtaaagagctgtttataaaaagaatagctacaagtgcgatagctctttact 320

                                                                       
Query: 121 aaaaatatgtagccctgaacgagttcaatccatgtaaaaattcttgcttgggtgtaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatatgtagccctgaacgagttcaatccatgtaaaaattcttgcttgggtgtaaagc 380

                                                                       
Query: 181 cctgccaagtccccatctttagctgcacagctattggagttcatagttcctatctaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgccaagtccccatctttagctgcacagctattggagttcatagttcctatctaagac 440

                                                                       
Query: 241 agttactttcctttgggtgttggctgccagtaacagatagctcatattccaatgcatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttactttcctttgggtgttggctgccagtaacagatagctcatattccaatgcatgac 500

              
Query: 301 cct 303
           |||
Sbjct: 501 cct 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no320_p14.g1 MSMg01no320_p14.g1 CHROMAT_FILE:
MSMg01no320_p14.g1 PHD_FILE: MSMg01no320_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:37 2005
         (283 letters)



>mm_chr4_77638835_77639517
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagattttttagtacatattttaaaagaataaactctcgtctgaataccactgcacttta 60
           ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||
Sbjct: 483 tagattttttagtacatattttaaaagaataaactctcgtcagaataagactgcacttta 424

                                                                       
Query: 61  gccagcagcaaacacatttaacaagatcaagtacccgggccaaggtcatgatgaccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gccagcagcaaacacatttaacaagatcaagtacccgggccaaggtcatgatgaccaaaa 364

                                                                       
Query: 121 ggcaagactcagaccctactgcctagagtagaaagcaagtttctaagcacaaagtcgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggcaagactcagaccctactgcctagagtagaaagcaagtttctaagcacaaagtcgctg 304

                                                                       
Query: 181 tttttctcttttactcttcacaacacttgccaagcaaattcaatacaagacaatttattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttttctcttttactcttcacaacacttgccaagcaaattcaatacaagacaatttattc 244

                                                      
Query: 241 tgagctacaattataaattacttcaaaatgtgtgtgtttattg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgagctacaattataaattacttcaaaatgtgtgtgtttattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)