BAC Information

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BAC

Clone NameMSMg01-321A07
Chromosome4 (Build37)
Map Location 32,423,230 - 32,423,533
singlet/doubletsinglet
Overlap geneBach2
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232
Downstream geneGja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321A07.T7 (MSMg01no321_a07.b1)MSMg01-321A07.TJ (MSMg01no321_a07.g1)
ACCAG440101AG440102
length728755
length of high quality
(start - end)
314 (45 - 358)521 (70 - 590)
definitionCHROMAT_FILE: MSMg01no321_a07.b1 PHD_FILE: MSMg01no321_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:40 2005CHROMAT_FILE: MSMg01no321_a07.g1 PHD_FILE: MSMg01no321_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCCCAGCTCTAACACCAAAGTCTCTATACGTTCCCTTAACCCAG
CCTCCCTAAAATACTAATAGACCCACCATGTACATTGAGCACTTAACCCT
GAGCACCTTGTAAGTGAGAGCACTTGATAAGGTCGCCACTGCAGCAGGTA
TTAGCCACTGCCGTACGAATGGACAGAGAACTTGGCTAGGTCATGACTCT
GAAAATCTAGCTTCTATGTTTCATAATGAGCAAACTGGGACTGCACATTT
GCCCTCCTGCCTGTTTTGTGACCACCTTACAAGGGACTATTAATTTCTAT
CATTCTTGTTTTTTCTTACCCCCCCACGCACGAACACTGCCTCTAAATAG
TAATTTCTAACCTTTTACGACCATTACAAAAAAATCAAGCAAAAGCTGCA
AAGTATATTTGAGAGTAAGTTCAGAAGTTAGAGTAGGTGTTCTCTCGGAG
GATCACTAAGACTTGGAGCACCTGGAGAAGGCTGCAGACGGAAGCCCTGG
ATGGTTATAGCTCCAGAGCTACATGTATGCTGGAGCTGAGCTCAGTTTGT
GTCTACTTTACTTTCTATTCTAGGGGCTGAGGCAGCCAGGAGTGCAGTGA
TAAATAAAGCTGTTAGCTAACGTGTCAGCACGGAGGTGGGTGGGGTAGTC
CTCTTCCTTTCTGCTTTAAATACAGCAG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCTCGCGGAATTCCTCCTGTCGAAAGGAAATTCAGGAAC
ATGAGTGCAGCAGAGGCTGAAGGAAAGGCCATCCAGAGTCTGCCCTACCT
AGTGATCCATCTGCAGACACCAAACCAAGACACTACTGCTGATGCCAAGA
AGTGCTTGCTGACAGGAGCCTGGTATAGATGTCCCCTGAGAGGTTCTGTC
AGAGCCTGACCAATACAGATGGGGATGCTTGCAGCCAACCACTGGACTGA
GCATGGAGTCCCCAGTGTAGGAGTTAGGGAAAGGACTGAAGAAGCGGAGG
GGTTTGTAACCCCATAGGAAGAACGATAATATCGACCAACCAGAGCCACC
CAGAGCTCCCAGGCACTAAACCACCAACCAAAGAGTATACATGGAGGGAC
CCATGGCTCCAGCTGCACATGTAGCAGAGGATGGCCTTGTCAGGCATTAC
TGAGAGAAGAGGCCCTATGAAGGCTTGATGCCCCAGTGAGGAGAATGCCA
GGGCAGGGAGACAGGAATGGGTGGGTGGGTGGGTGGCTGTACACCCTTTA
ACCGGCAGGTTTACAAGTTGAGCCCATTCTTTTTGCTCCCCCCGTTCTCT
CTTTCTTTTTCCTCCCTTTCCTTCCCGCCCCTTTTCATTTCCCCCCCTTT
CTCTTTCGACCCTCTCTTATACACCCTTATTTCTCTTTTCCTTTCCCCGC
CTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_a07.b1 MSMg01no321_a07.b1 CHROMAT_FILE:
MSMg01no321_a07.b1 PHD_FILE: MSMg01no321_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:40 2005
         (314 letters)



>mm_chr4_32423022_32423733
          Length = 712

 Score =  505 bits (261), Expect = e-147
 Identities = 295/307 (96%), Gaps = 4/307 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tccatcccagctctaacaccaaagtctctatacgttcccttaacccagcctccctaaaat 68
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 209 tccatcccagctctaacaccaaagtctctagacgttcccttaacccagcctccctaaagt 268

                                                                       
Query: 69  actaatagacccaccatgtacattgagcacttaaccct-gagcaccttgtaagtgagagc 127
           |||||||||  |||| |||||||||||||||||||||| ||  |||||||||||||||||
Sbjct: 269 actaatagagacaccgtgtacattgagcacttaacccttga--accttgtaagtgagagc 326

                                                                       
Query: 128 acttgataaggtcgccactgcagcaggtattagccactgccgtacgaatggacagagaac 187
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 acttgataaggtcgccactgcagcaggtattagccactgccgtaggaatggacagagaac 386

                                                                       
Query: 188 ttggctaggtcatgactctgaaaatctagcttctatgtttcataatgagcaaactgggac 247
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttggctaggtcatgactctaaaaatctagcttctatgtttcataatgagcaaactgggac 446

                                                                       
Query: 248 tgcacatttgccctcctgcctgttttgtgaccaccttacaagggactattaatttctatc 307
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 447 tgcacatttgccctcctgcctgttttgtgac-accttacaagggactattaatttctgtc 505

                  
Query: 308 attcttg 314
           |||||||
Sbjct: 506 attcttg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 712
Length adjustment: 9
Effective length of query: 305
Effective length of database: 703
Effective search space:   214415
Effective search space used:   214415
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)