BAC Information

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BAC

Clone NameMSMg01-321K11
Chromosome4 (Build37)
Map Location 127,268,668 - 127,436,729
singlet/doubletdoublet
Overlap genenone
Upstream geneClspn, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321K11.T7 (MSMg01no321_k11.b1)MSMg01-321K11.TJ (MSMg01no321_k11.g1)
ACCAG440566AG440567
length742735
length of high quality
(start - end)
268 (45 - 312)345 (69 - 413)
definitionCHROMAT_FILE: MSMg01no321_k11.b1 PHD_FILE: MSMg01no321_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:27 2005CHROMAT_FILE: MSMg01no321_k11.g1 PHD_FILE: MSMg01no321_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,268,668 - 127,268,916)(127,436,386 - 127,436,729)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTATTGCCAGGGGTGGAAATAGGACTTCCCTTCCTTAATCACTTC
TGTGCCTTCCTCAGTTTGCCTGGATTTCCCGAGGGCCATAGGAATGCAGA
GCATTCCCACACTGCATTAGAAATAACCAAGGTGATGGATAGTCCCAAGC
AGCAAGGAGGGCAAGCAAGGTGCTCTTCTTCCACTATCCCTGGACTGCAG
ATAAATTCCATCCGTCTTGACTGGGGTAGTGGAGTTTTGGTGGTCATGGA
ATTGAGCTGGCTGTCTGCCAAACCCTCCTCTCCCTGCAGCAAGGAGGCTG
ACCTTGTATTTTAACCCCCCCCCCCCACCCAGAACGCAGGAGTCTGCTTC
TCTGCCTAGCTCCCCCCCACAATGAAACATGGTTTTGGGGACCTCCGCCT
CTTGTTGGTACTTCTTGCTCACAGACAATGAATTTCACATGTTCACTCCT
GGAATGTCTGTCCTTTGCTGTCCCTATGGTCTCCCCTTGTTAGTTGGCCA
CAGATGGATTCTCAGATATTACTATTTTTTACACGGTCTTTACACACCCT
TTCCTGTTGCCGTTTTGCCACCCTTGTTGTTCCTTGTTTTTTCGCCCTTT
TCTTCGATTATCTTTACGCTCTGCCCCCTCCCCTTGCTTTTTTTCCCTTT
TGCCTCCCTTTTTTTTTTTTTTTTTCCTATATTGCCCTTTTT
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCACGCGGAATTCAGTGGGTTTCACTTGAACTACCTCATG
TCCCCAGTACCAGTTACACAGAACTCGAAGGTACACTCAGGTCAGACAAT
TAACTAATACACAAACAAAAGGAATGGGTAAGATTGACCAGGCAAAAGAG
CAGTCATGGTAGAGTGGGTGAGGCCAACGGTGTGAGCAAGAGCAACAGCA
ACAAAAACCCCAGTGCCCGCTGCTGGGAGCCAGCTAAGTCCCTTCGAAGC
AAAACTGTTCAAAGATTTTTGTGTGGTGTAGCTCATTTAATCCCCACAGG
AGCCCTGGCCCAGGAAGTCTAGAAAGAGGTAGCAGAGGGCTGATGGGGTG
TAAGAAGGCTGACGCTGAGGCTTAGAGACAGAGGACAGAGCTCAGCAGGG
TCAGAGGTGGAGGGCTTTGTAAATAGGATTGCCGGATAAATCCGAGCACC
GTCACGGCCTTGTTGAAATCTAGACTCTGTGCGCTAGAGAGATGTGATAT
TTGTCTTTCTGATCCCGGCTTATTTTGTTTAATAAGGTGATCTCCAGTTC
CTCAAAAAATGGTGTGCTTTCATTCTGCGCGGCCGGATAATGCCATTATT
ACTCCTCTATATAACGACTTCCAATGTTTAACCACGTTATTTTAAAAAAT
CTAAATATCCCTGATTTTCTAACTAACCATATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_k11.b1 MSMg01no321_k11.b1 CHROMAT_FILE:
MSMg01no321_k11.b1 PHD_FILE: MSMg01no321_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:27 2005
         (268 letters)



>mm_chr4_127268449_127269116
          Length = 668

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 20  aggggtggaaataggacttcccttccttaatcacttctgtgccttcctcagtttgcctgg 79
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 220 aggggtggaaataggacttcccttccttaatcacttctgtgccttcctcagtttgcttgg 279

                                                                       
Query: 80  atttcccgagggccataggaatgcagagcattcccacactgcattagaaataaccaaggt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atttcccgagggccataggaatgcagagcattcccacactgcattagaaataaccaaggt 339

                                                                       
Query: 140 gatggatagtcccaagcagcaaggagggcaagcaaggtgctcttcttccactatccctgg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gatggatagtcccaagcagcaaggagggcaagcaaggtgctcttcttccactatccctgg 399

                                                                       
Query: 200 actgcagataaattccatccgtcttgactggggtagtggagttttggtggtcatggaatt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 actgcagataaattccatccgtcttgactggggtagtggagttttggtggtcatggaatt 459

                    
Query: 260 gagctggct 268
           |||||||||
Sbjct: 460 gagctggct 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no321_k11.g1 MSMg01no321_k11.g1 CHROMAT_FILE:
MSMg01no321_k11.g1 PHD_FILE: MSMg01no321_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:27 2005
         (345 letters)



>mm_chr4_127436186_127436930
          Length = 745

 Score =  619 bits (320), Expect = 0.0
 Identities = 338/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcagtgggtttcacttgaactacctcatgtccccagtaccagttacacagaactcga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 544 aattcagtgggtttcacttgaactacctcatgtccccagtaccagttacatagaactcga 485

                                                                       
Query: 61  aggtacactcaggtcagacaattaactaatacacaaacaaaaggaatgggtaagattgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggtacactcaggtcagacaattaactaatacacaaacaaaaggaatgggtaagattgac 425

                                                                       
Query: 121 caggcaaaagagcagtcatggtagagtgggtgaggccaacggtgtgagcaagagcaacag 180
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 424 caggcaaaagagcagtcatggtagagtgggtgtggccaacggtgtgggcaagagcaacag 365

                                                                       
Query: 181 caacaaaaaccccagtgcccgctgctgggagccagctaagtcccttcgaagcaaaactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caacaaaaaccccagtgcccgctgctgggagccagctaagtcccttcgaagcaaaactgt 305

                                                                       
Query: 241 tcaaagatttttgtgtggtgtagctcatttaatccccacaggagccctggcccaggaagt 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcaaagagctttgtgtggtgtagctcatttaatccccacaggagccctggcccaggaagt 245

                                                       
Query: 301 ctagaaagaggtagcagagggctgatggggtgtaagaaggctga 344
           ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 244 ctagaaagaggcagcagagggctgatggggtgtaagaaggctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)