BAC Information

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BAC

Clone NameMSMg01-321P19
Chromosome4 (Build37)
Map Location 144,695,840 - 144,696,129
singlet/doubletsinglet
Overlap geneVps13d
Upstream geneLOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321P19.T7 (MSMg01no321_p19.b1)MSMg01-321P19.TJ (MSMg01no321_p19.g1)
ACCAG440809AG440810
length732737
length of high quality
(start - end)
166 (71 - 236)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no321_p19.b1 PHD_FILE: MSMg01no321_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:51 2005CHROMAT_FILE: MSMg01no321_p19.g1 PHD_FILE: MSMg01no321_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGAGTAGGCGGAA
TTCCAGGCTTTTCCGGACAAGCTGTTGGCAGAGGATGAGGCCCTCTAGAT
TCTGCCCTCTATTTTTTTTAATGTAACTCTTTTTTTTTTTTTTTTTTTTT
TTTGGCTTTTCAAGACAGGGTTTGTCTGTGTAGCCCTCGATGTCCTGGAA
CTTGATTTTTAGACCAAACTGACCTTGAACTCAAAGATTAACCTGCCTAT
GCCTCCCTCTGTAGTGCTGGGATCAAAGGTGTCAAAGGTCGCCACTGCCC
AGCTTTAGATTCTGCTTTTTTTTTTTCACCTTGATGTAAATACATGCTTG
TTTCTGAAAGTTAAAATCCATACCTTTTTTTCTCCTGTCATAAAAAATCT
AAACTGTGTTAGCATTCCCCCCCCCCTCTTACAGGGGGGTCCTCAGCCCC
CTTGTGTAATCATTTAGCTTGGAAAAATCCTAATGAGGCTTCACTTTTTA
AAAGAATTTTAGGATAAGAGGAATCCGTTCCTTCCATCTCTGACACTGGG
CGTTCAGTCCCATCATAAAGCTGCAAGAGTCAGTATAGCCCCCAACACAG
AAATCTGCTTTTGGAGACCTAACAGACTTAATCAATGGGTTCCCTAAGTG
GAGAGACCGCCTGGAACGGTTCCCAAAAAGAGGAAAATCATCAAAACCTC
AAAATGCGGAGTGTGACACATTCGGAGTCCCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAATTAAGAAGGGAGATGGAAAAA
GATAAAAGGTTCATATCAAATAACCTCAATTCATAACAAAAACTTTTACT
GAGTGCTTCCTTACATACTGGACCCATGCAAGAAGCTAAAAAAGGTTGAA
CCCTAGAGACAACAATTGCACAAGGAAGAGATCAAGGCAATCAGATGACC
TACCTTCATAAAGTCACCTATGATGTGAAAGGCTAAAGGAAAGACAGAAT
TACAATGCTGGAGGGCAGAGAATAAGGTCAGATTTATTTGGCTTTGACAA
AAGCAGGTGGTGGTGATGTGTGCATTACCGCTCCCTCTTGAAATGTGAAT
AGCAACTCAATGAAACTGAGGCCCCCCCGATACTCTAGGAAATGGGACTC
TCGGGTGCAAAGACTAAGACATTAAGTACACAGCACACTCAGGAACACTG
ACTGCTGTGCTGTATCTTCAGTGCACATTCTGCATGAGAGACGTGGCAGA
GATATCCAGAATCCAGAAATGTACATTTCAGGGCCACCAAGAAACTGTGA
GAACACATTGCATTGGCTTGGCAATTTTCAGAGTTAAGTTGGTGTGACAA
TTGATGGAATAAACAGCACAGGGAACGTATTCATTCTGTTCAAGGAACAC
CACTCTGTAACTGGACACTGTGATGTATCTCTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_p19.g1 MSMg01no321_p19.g1 CHROMAT_FILE:
MSMg01no321_p19.g1 PHD_FILE: MSMg01no321_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:51 2005
         (290 letters)



>mm_chr4_144695640_144696329
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaattaagaagggagatggaaaaagataaaaggttcatatcaaataacctcaattcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 taaattaagaagggagatggaaaaagataaaaggttcatatcaaataatatcaattcata 260

                                                                       
Query: 61  acaaaaacttttactgagtgcttccttacatactggacccatgcaagaagctaaaaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaaacttttactgagtgcttccttacatactggacccatgcaagaagctaaaaaagg 320

                                                                       
Query: 121 ttgaaccctagagacaacaattgcacaaggaagagatcaaggcaatcagatgacctacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaccctagagacaacaattgcacaaggaagagatcaaggcaatcagatgacctacct 380

                                                                       
Query: 181 tcataaagtcacctatgatgtgaaaggctaaaggaaagacagaattacaatgctggaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcataaagtcacctatgatgtgaaaggctaaaggaaagacagaattacaatgctggaggg 440

                                                             
Query: 241 cagagaataaggtcagatttatttggctttgacaaaagcaggtggtggtg 290
           ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagaagaaggtcagatttatttggctttgacaaaagcaggtggtggtg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)