BAC Information

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BAC

Clone NameMSMg01-322I22
Chromosome4 (Build37)
Map Location 13,134,533 - 13,134,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545592, OTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322I22.T7 (MSMg01no322_i22.b1)MSMg01-322I22.TJ (MSMg01no322_i22.g1)
ACCAG441224AG441225
length750748
length of high quality
(start - end)
291 (441 - 731)288 (79 - 366)
definitionCHROMAT_FILE: MSMg01no322_i22.b1 PHD_FILE: MSMg01no322_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:33 2005CHROMAT_FILE: MSMg01no322_i22.g1 PHD_FILE: MSMg01no322_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGCTACTGTCCTTTATACCCTTGAACTTGGAGCTAAAATAAGCC
CTTCTTAAGTTGCTTTAGTCAGATCTTTTTGCCAAAGCAACAAAGAAAGT
AGTATCAGTATATTTAACATTTCTATAAAAATACTGCAATAGTTCATCCA
CATATATGTTAGAGGTACAAAAGATAATTTTTCTAGATGTAAAGGGTATA
ATTTGGGATGAGAGCTCAATACTTATAGTTTGATGCATATGGATATTTAT
GAATCTACATGATCTCCGTGTATGATTGTGTGCTTGTTGTGTATGCATGC
ATCTATATACATGTGTTTGTTCATGCCGGACAGACAACGATATTAGATTT
CCCTCTAACACTTTCCATATTCATGTTTTTTAAATAAAAACTGTCTGTCA
CTAAACCTTAAGATCACTGATTGGCTAAACTCATTGACCAGTGTGTTCTC
AAGAGCTTCTTGTGACTGGCTCATACACATAGCATTACAGCATGAGCTGT
TAACCTTGGCGTTTTACATGGATACTCCCGATTAACTTGGGTTCTAATAC
TTGAGTGACAAAGCCTCTATCCACTGAGCCATCGTCACAGCCTATAAGCT
ATGCAATCTTTACAATTGGAAATATCAGTATATCAGTGATTAGCAGAGTC
GGACTATTGGTCATACTATTATTTAAATTGTTTGTAATGTTTATCCAGCA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCGAAAATACAGAACTCGTTGACATGAAAAGGA
GCTCTTTCTCTCACAAAGCTGTTGGATTACTCTCGAGATTTGAATAAAAA
TCTCTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCACCCCAA
CATATACATATAAGTGCTTTCTACATTAAATCTGGGCAACTCTCTTTATG
TTGCTATAAATTGTTGAATAAATTGTTTTTTTTCTCTGGATGTTTCTAGA
AAGGTCATATGTCTTGTTTTTTTATGCCCCCCACCCCCCCTGGTCATGCG
CTTATCAAAGGGAAAGAGTGGCACCCACCATTAAGACAGAAATTCGTCAA
AGGAGTATTTATGGCTAAGCAAACCAACATTTCAGCTCTGGAAATTCTAA
ATTTGTTGCCAGACAGTATCTGGAAATTATTGTGGGCATGTTGACTGAAT
ACAGACCCCTTCAGCTTTTCTGAGAAATCTGACCATCCGTGATGGTCCCC
CTTCCTTCTTGCTGTGATCTAGGTTAAACCTGGTGTCTCATAGGGGTATC
TCATGACAGAGAGTGCTGTGGTAATGGCACTGAAATGACATTCTCTGCAC
TTTGCAGTTGCAACTGTTATAATGGTATGCGAAAAATGGAATTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_i22.g1 MSMg01no322_i22.g1 CHROMAT_FILE:
MSMg01no322_i22.g1 PHD_FILE: MSMg01no322_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:33 2005
         (288 letters)



>mm_chr4_13134303_13134990
          Length = 688

 Score =  389 bits (201), Expect = e-112
 Identities = 250/285 (87%), Gaps = 30/285 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactcgttgacatgaaaaggagctctttctctcacaaagctgttggattactctcgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gaactcgttgacatgaaaaggagctctttctctcacaaagctgttggattactctcgaga 290

                                                                       
Query: 61  tttgaataaaaatctcttctctctctctctctttctctctctctctctctctctctctct 120
           ||||||||||||||||              ||||||||||||||||||||||||||||||
Sbjct: 291 tttgaataaaaatctc--------------ctttctctctctctctctctctctctctct 336

                                                                       
Query: 121 ctctctctctctctctctctctctctctctctctctctctcctccaccccaacatataca 180
           |||||||||||||||||||||||||                |||||||||||||||||||
Sbjct: 337 ctctctctctctctctctctctctc----------------ctccaccccaacatataca 380

                                                                       
Query: 181 tataagtgctttctacattaaatctgggcaactctctttatgttgctataaattgttgaa 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataaatgctttctacattaaatctgggcaactctctttatgttgctataaattgttgaa 440

                                                        
Query: 241 taaattgttttttttctctggatgtttctagaaaggtcatatgtc 285
           ||||||| |||   |||||||||||||||||||||||||||||||
Sbjct: 441 taaattgctttaactctctggatgtttctagaaaggtcatatgtc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)