TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGA
ATTCTTTAGAAAATAGGCTACCACTGGAGTGAGTGAGGTAATCATGTGAC
TGCACCCTTTTGTTCACAGTGTAAGAAGCTAGAAGTGTCATTGCTCAGTA
TGATGGCATATTAACAAATGGTACGAACTTTTTCACATTGGCCCATCAGT
TTTGCTAAGAATGATGTTATTTTCATTAATGTTACCTAATTTTTTTCTTC
CTGCTTTCAAATATCTTACACAGACACAGACTGACAGAAAAACATTAGAA
GACCTTGAATATTCCTTATAGAAACCTAATCCAGCCAATCATACCAGAGC
TCAGTTGCTACTTATTTGGTGATATTCTATGTAGACTTTTATGTCAGTGA
GTTTTTATTCAACACTAGTCATTATCACTTATTTTAATGTAATTTTAGAC
AGCATAGCATTAAAAAACTTTTTTCATAGAGGAATTATACCCTTTTAAAG
GATAGTTAAGGGTCTGCAAAGACATGCACAAATTGATTGTCTTGTGAGCA
TGAAGAATAGGCTTCAGATTCCCAGAACTCATAAAAGCCAGGAAGGCATG
CTAACTGACTGTCTTTGAAGCACTATGAAGGCCGAGTCAAAAAAAAAAAT
GGCCCTGAAATAGGCAGAATTGGCAATTTTTCTTACTGAGATACTTGATC
TCAATAAATAAAATGAAGATAAACCAAGGAAGACAGCAACATCCACTATA
ATCCTCA

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCATTCTGCACTAAACCCTTCTATTCTTGGGCT
TCTTTTGACTGTGAGATATTATCAACTGCTTCTATTTATCTAGGGGTTAT
GGGATTGTTTAGATGGTTTATCTGATCCTGATTTAACTTTGATATTTGGT
ATCTGCCTAGAAAATTGTCCATTTAATCCAGATTTTTCAGTTTTGTTGAA
TATAGGCTTTTGTAGCAGGATCTGTGGGTTTTTTTTAATTTCCTTGATTT
CAGTTGTTATTCCTCCCTTTTTTATTTCTGATTTTGTTAACTAGGATACT
GTTTCTAAACCTAATAGAAAAGAAAGTGAGGAAAAGCCTCAAATACATGG
TCACAGGGGAAATTCCTGAAAAGAACACCAATGGCCTATGCTCTAAGATC
AAGAATTGGCAAATTTGAACTCAAAATTGCAAAGCTTCTGTAAGGAAAAG
GACATTTTCAATACGACAAAGTGTCAACAAAAAAAAAAAAAGATACTGGG
AAAAGATCTTTACCAATACCACATCTGATAAAGGGCTAATATCCAATATG
TATAAAGAACTCAAGAAGGTAGACTCCAGAGAAACAAATAACTCAATTGA
AATATGGGGAGCAGAACTAAACAGAGACTTCTCTACTGAATGAACATGAA
TGGCCGAGAAACACCTAAAGAAATATTCAACACCTCCTGAGCCTTGCTGC
TCCAATTTTAG

Query= MSMg01no324_b06.b1 MSMg01no324_b06.b1 CHROMAT_FILE:
MSMg01no324_b06.b1 PHD_FILE: MSMg01no324_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:18 2005
         (641 letters)



>mm_chr4_51198617_51199657
          Length = 1041

 Score = 1129 bits (584), Expect = 0.0
 Identities = 624/640 (97%), Gaps = 8/640 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattctttag-aaaataggctaccactggagtgagtgaggtaatcatgtgactgcaccct 64
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aattctttagaaaaataggttaccactggagtgagtgaggtaatcatgtgactgcaccct 782

                                                                       
Query: 65  tttgttcacagtgtaagaagctagaagtgtcattgctcagtatgatggcatattaacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tttgttcacagtgtaagaagctagaagtgtcattgctcagtatgatggcatattaacaaa 722

                                                                       
Query: 125 tggtacgaactttttcacattggcccatcagttttgctaagaatgatgttattttcatta 184
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 721 tggtatgaactttttcacattggcccatcaattttgctaagaatgatgttattttcatta 662

                                                                       
Query: 185 atgttacctaatttttttcttcctgctttcaaatatcttacacagacacagactgacaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgttacctaatttttttcttcctgctttcaaatatcttacacagacacagactgacaga 602

                                                                       
Query: 245 aaaacattagaagaccttgaatattccttatagaaacctaatccagccaatcataccaga 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaccattagaagaccttgaatattccttatagaaacctaatccagccaatcataccaga 542

                                                                       
Query: 305 gctcagttgctacttatttggtgatattctatgtagacttttatgtcagtgagtttttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gctcagttgctacttatttggtgatattctatgtagacttttatgtcagtgagtttttat 482

                                                                       
Query: 365 tcaacactagtcattatcacttattttaatgtaattttagacagcatagcatt--aaaaa 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 481 tcaacactagtcattatcacttattttaatgtaattttagacagcatagcattaaaaaaa 422

                                                                       
Query: 423 ac-ttttttcatagaggaattatacccttttaaaggatagttaagggtctgcaaagacat 481
           || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acttttttttatagaggaattatacccttttaaaggatagttaagggtctgcaaagacat 362

                                                                       
Query: 482 gcacaaattgattgtcttgtgagcatgaagaataggcttcagattcccagaactcataaa 541
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcacaaagtgattgtcttgtgagcatgaagaataggcttcagattcccagaactcataaa 302

                                                                       
Query: 542 agccaggaaggcatgctaactgactgtctttgaagcactatgaaggccgagtcaaaaaaa 601
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 301 agccaggaaggcatgctaactgactgtctttgaagcactatgaaggccgagtc----aaa 246

                                                   
Query: 602 aaaatggccctgaaataggcagaattggcaatttttctta 641
           ||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 245 aaaatggtcctgaaataggcagaattggcaagttttctta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)