Query= MSMg01no324_p06.b1 MSMg01no324_p06.b1 CHROMAT_FILE:
MSMg01no324_p06.b1 PHD_FILE: MSMg01no324_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:23 2005
(573 letters)
>mm_chr4_118513681_118514655
Length = 975
Score = 971 bits (502), Expect = 0.0
Identities = 558/590 (94%), Gaps = 22/590 (3%)
Strand = Plus / Plus
Query: 6 gaattcaaataataattgcagat--aaaaaaaatcacacgatggagcatgctctctttaa 63
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaataataattggagatttaaaaaaaatcacacgatggagcatgctctctttaa 265
Query: 64 cttgctgttattctgaagccttggtttcctcttctgtagaattccagaagtaaccgcttc 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttgctgtcattctgaagccttggtttcctcttctgtagaattccagaagtaaccgcttc 325
Query: 124 ccttccaggcttgctagactaaaacgtgatgatgtgctgcaccagccacaagtactggcc 183
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 326 cctcccaggcttgctagactaaaatgtgatgatgtgctgcaccagccacaagtactggcc 385
Query: 184 tacggtttgtgacattgagcctccatccctgccttccatctgagtctcagacgcctaact 243
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 386 tatggtttgtgacattgagccgccatccctgccttccatctgagtctcagactcctaact 445
Query: 244 atccagaaagagaacacagactataacgtccgtcttccttagaattcctgtgaccagagg 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 446 atccagaaagagaacacagactataaagtccgtcttccttagaattcctgtgaccagagg 505
Query: 304 atggtggtggtgcactaaattaatcccaaaacttggaaggcagaggcaatcgggtttcta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atggtggtggtgcactaaattaatcccaaaacttggaaggcagaggcaatcgggtttcta 565
Query: 364 taagttcaaagacagcctggtcacacagtaagttctaggacaggcaaggatacacagaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taagttcaaagacagcctggtcacacagtaagttctaggacaggcaaggatacacagaga 625
Query: 424 aaccctgtttggaaaaacaaacaaacaaa--------------------aaactaaaaag 463
||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 626 aaccctgtttggaaaaacaaacaaacaaacaaacaaacaaacaaaccaaaaactaaaacg 685
Query: 464 tatttctatgagctgctccataaacacagcaaatattaaaaagtttgttatagctgggca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tatttctatgagctgctccataaacacagcaaatattaaaaagtttgttatagctgggca 745
Query: 524 gtggtggcacatgcctttaatctcagcacttgcgaggcagaggcaaacag 573
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 746 gtggtggcacatgcctttaatctcagcacttgggaggcagaggcaaacag 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 975
Length adjustment: 10
Effective length of query: 563
Effective length of database: 965
Effective search space: 543295
Effective search space used: 543295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_p06.g1 MSMg01no324_p06.g1 CHROMAT_FILE:
MSMg01no324_p06.g1 PHD_FILE: MSMg01no324_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:24 2005
(473 letters)
>mm_chr4_118697591_118698462
Length = 872
Score = 891 bits (461), Expect = 0.0
Identities = 470/473 (99%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 1 tggggctgggagttagaggcctggtctcctggtttaaatccctttagctgcttatcttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tggggctgggagttagaggcctggtctcctggtttaaatccctttagctgcttatcttga 613
Query: 61 tttctttgtttggaatttcttctgttcttatctcgtccttgatttggggcacaaaatccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttctttgtttggaatttcttctgttcttatctcgtccttgatttggggcacaaaatccc 553
Query: 121 ctgctaggcattcctctgtaaacccaccaagccaagctgagagataaacaaaggaactag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgctaggcattcctctgtaaacccaccaagccaagctgagagataaacaaaggaactag 493
Query: 181 gaaaaacacaggaggcagctccctcttcctttgcacccccaacccctgtttctggaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaaaaacacaggaggcagctccctcttcctttgcacccccaacccctgtttctggaagca 433
Query: 241 agagtttgagtcagctgaactggaggacctgccattccccaactcccttagtgttctacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agagtttgagtcagctgaactggaggacctgccattccccaactcccttagtgttctacc 373
Query: 301 tggaagtttaaattattatgtaaagagtatgcaaaaccccaaacccaaaacagaacaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggaagtttaaattattatgtaaagagtatgcaaaaccccaaacccaaaacagaacaaca 313
Query: 361 cacaaacaggcataataagacccccacaaaaaccagccggccaaacaaacaaaaaaccca 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacaaacaggca-aataagacccccacaaaaaccagccggccaaacaaacaaaaaaccca 254
Query: 421 aatctaatcttcccggtcttgccctcccccgaagttatagtcaacgtcagaaa 473
|||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatccaaccttcccggtcttgccctcccccgaagttatagtcaacgtcagaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
