Query= MSMg01no324_p10.b1 MSMg01no324_p10.b1 CHROMAT_FILE:
MSMg01no324_p10.b1 PHD_FILE: MSMg01no324_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:24 2005
(699 letters)
>mm_chr4_49214558_49215658
Length = 1101
Score = 971 bits (502), Expect = 0.0
Identities = 571/594 (96%), Gaps = 2/594 (0%)
Strand = Plus / Minus
Query: 108 aagacacccacaaaggagaagacatcccatgttaacagattcaaagaactaacatagtta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 aagacacccacaaaggagaagacatcccatgttaacagattcaaagaactaacatagtta 1042
Query: 168 aaaggaccagacgaggtggggcatggtggtacgtgattttaatcccagcacttggaaggc 227
|||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 1041 aaaggaccagacaaggtggggcatggtggtacaagactttaatcccagcacttggaaggc 982
Query: 228 agaagctggtggatctctttgaggttgaggccagcctgatctacaaagcaagttccaaga 287
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 agaggctggtggatctctttgaggttgaggccagcctgatctacaaagcaagttccaaga 922
Query: 288 tagtgtctcaaaaataaaaatcaaaacaaggaagcaaacaacaaaacccaccaaattttc 347
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 921 tagtgtctcaaaaataaaaatcaaaacaaggaagcaaacgacaaaacccaccagattttc 862
Query: 348 tagactatgaaaaataatccagagttaatccaattgctaacaaaatttcaaaggtatttt 407
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 861 cagactacgaaaaataatccagagttaatccaattgctaacaacatttcaaaggtatttt 802
Query: 408 ccattttctttttaaaaaggcaatcttaaataatacttcatgatggcattcttatctgtt 467
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctattttctttttaaaaaggcaatcttaaataatacttcatgatggcattcttatctgtt 742
Query: 468 gattatggtttttt-actgaagcctgggatgctataaggttcagagttgtattaagtcca 526
|||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 741 gattgtggtttttttactgaagtctgggatgttataaggttcagagttgtattaagtcca 682
Query: 527 gtgtcttatcatatctcttctgatcctgcttcagtgaatggaggaaggacagccatactg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtcttatcatatctcttctgatcctgcttcagtgaatggaggaaggacagccatactg 622
Query: 587 tcttatgaaaggcaaatgcagtttctctgggggaagaacaa-gtccaggcttctcattag 645
|||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 621 tcttatgaaaggcaaacacagtttctctgggggcagaacaaagtccaggcttcccattag 562
Query: 646 actccaataaaaccccagcagcatcaacagccacttccaatgaggcatcatctg 699
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 actccagtaaaagcccagcagcatcaacagccacttccaacgaggcatcatctg 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1101
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1091
Effective search space: 751699
Effective search space used: 751699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_p10.g1 MSMg01no324_p10.g1 CHROMAT_FILE:
MSMg01no324_p10.g1 PHD_FILE: MSMg01no324_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:24 2005
(615 letters)
>mm_chr4_49064723_49065737
Length = 1015
Score = 1174 bits (607), Expect = 0.0
Identities = 613/615 (99%)
Strand = Plus / Plus
Query: 1 taaactgaggaatactgaatggctaagaagcacctaaagaaatgttcaacatccttggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaactgaggaatactgaatggctaagaagcacctaaagaaatgttcaacatccttggtc 260
Query: 61 atcagggaaatgcagatcaaaacaaccctgggattccacctcacaccagtcagaatagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagggaaatgcagatcaaaacaaccctgggattccacctcacaccagtcagaatagct 320
Query: 121 aagatcaaaaattcaggtgacagtagatactggggaggatgtggagaaagaagagcactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatcaaaaattcaggtgacagtagatactggggaggatgtggagaaagaagagcactc 380
Query: 181 ctccattgctggtgggattgcgggctgatgcaaccactctgaagatcagtttggccgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccattgctggtgggattgcgggctgatgcaaccactctgaagatcagtttggccgttc 440
Query: 241 ctcagaaaatgaggacccagcaatgccactcctgggcatatacccagaagatgctccaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagaaaatgaggacccagcaatgccactcctgggcatatacccagaagatgctccaac 500
Query: 301 ttgtaataaggacacatgctccactatgttcatagcaaacttataatagccagaggctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtaataaggacacatgctccactatgttcatagcaaacttataatagccagaggctga 560
Query: 361 aaagagctcagatgtccctcaacagaggaatggatacagaaaacgtggtacatctacaca 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 aaagagctcagatgtccctcaacagaggaatggatacagaaaatgtggtacatctacaca 620
Query: 421 atggagtactactcagttattaaaaacaatgaatttatgaaattcttaggcaaatggcgt 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 atggagtactactcagttattaaaaacaatgaatttatgaaattcttagacaaatggcgt 680
Query: 481 ctcttcccagcaatagaatgtggaccaagacaccagccttctgctcatctgtcagttcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttcccagcaatagaatgtggaccaagacaccagccttctgctcatctgtcagttcac 740
Query: 541 ttttgttgttgttgttgttgaattgtaggtactcaactttttaaagtatcatttgtttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttgttgttgttgttgttgaattgtaggtactcaactttttaaagtatcatttgtttta 800
Query: 601 catgtatgagtgttt 615
|||||||||||||||
Sbjct: 801 catgtatgagtgttt 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
