BAC Information

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BAC

Clone NameMSMg01-325A01
Chromosome4 (Build37)
Map Location 114,070,768 - 114,070,869
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325A01.T7 (MSMg01no325_a01.b1)MSMg01-325A01.TJ (MSMg01no325_a01.g1)
ACCAG443000AG443001
length685716
length of high quality
(start - end)
102 (350 - 451)557 (74 - 630)
definitionCHROMAT_FILE: MSMg01no325_a01.b1 PHD_FILE: MSMg01no325_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:27 2005CHROMAT_FILE: MSMg01no325_a01.g1 PHD_FILE: MSMg01no325_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTAAATGCCTGAGGTGGGCGGAATTCTTAGAAATGCCAAAAGAGAGG
GGCCACATGAAGAATGACCGAGAAGCGAGGTATGAACCTTGAATTCTGTG
TTCACTTATGAGATATGGAGGATTTGAAGAATATGGTGGTCTGCTTTGCA
TCTTACAAGTCCGTTCAGAACTCAGTGTGAATGATGCTGAGGTGCTGGGA
CAGGGATCAAAGAGTCTGGGCTGGATCAGAGCTGGTAGCAGGTGGCGAAT
GTAGGGTCTTACCCACATGGGTGCAGTGCGACTGGAAGGTTAAGTTCTGG
CCCACTGCGGTAGAGCCAGTAACCAGCATTTTGTGACAGGTGATAAGCAG
AGGCAGCAAGAGTTAGACTGATGGCTTTAGATGTTTTTATTTTGACCAGT
TTCTTTATTAGTTTAGACAGATTGAATAAGGAACAGAATCTTGTTGAGAA
GGTACCAACAGCCCAGTTTGAGGTCATGTTAATCATGAGCTGCCCACCAA
GCGGAGGTTGTGGGAGGCAGCTTAGAAATATCTTGCTGCTTGGGGGTGTG
TACAGGGCTGTGGACACATTTAGGGCTCATTGCACAGAGGCGAGATACAA
CCTACTAGACCCATTAGAGATGGTGTTGATGGCAGATGACCGATAGATAG
ATAGACAGACAGACAGACAGACAGGCTGAACGCAT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCACATTCCTTCTTCATGTCCTCTACCATCAT
CATGAGATATGCTTTTAAATCCAGGTCTATCTTTTCAGGTGTGTTAGGGT
GTCCTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTTG
TCCTGGTTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCA
ATCTCTGGAGTTAGTTGCTATAGTTGTCTTTGTTAAGAGATTGTTCCTCT
GTTGATTTTGTTGCCCTCAATCAGCAGGTATGGGAGACAAGCTCGCTCCT
CTGAGTTTCAGTGGTCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCTTTCA
GGGAAGGTGTACAGTTATCTCGCCGCTTGGACCTCCTCCTGGCTGAAGGT
GACGGCCCAAAACAGGATCTTGCCCAGAAGCTGTGTTCCTTTGGCCAGGA
AGGTGGCCTTTTGTCTGGAGTCGAATATGTCGCCGCCTCAGAAGCTCTGT
GGCTCTCGCCAGGAAGGTTGCCGGCTGTCTGGAGCCAAAGATGGCGCCGC
CTCAGAAGCTCTGTGGCTCTCGCCAGGAAGGTGGCCGGTTGTCTGGAGCC
GAAGATGGCGCCCCCTCAGAAGCTCTGCGACTCTCGCCCGTCTCAGAAAC
GGCTGGCCTCTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_a01.b1 MSMg01no325_a01.b1 CHROMAT_FILE:
MSMg01no325_a01.b1 PHD_FILE: MSMg01no325_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:27 2005
         (102 letters)



>mm_chr4_114070568_114071069
          Length = 502

 Score =  174 bits (90), Expect = 1e-48
 Identities = 99/102 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggcagcaagagttagactgatggctttagatgtttttattttgaccagtttctttatt 60
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 302 gaggcagcaagagttagactgatggatttagatgtttttattttgagcagtttctttatt 243

                                                     
Query: 61  agtttagacagattgaataaggaacagaatcttgttgagaag 102
           ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 242 agtttagacagattgaagaaggaacagaatcttgttgagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)