BAC Information

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BAC

Clone NameMSMg01-325F03
Chromosome4 (Build37)
Map Location 24,597,595 - 24,598,257
singlet/doubletsinglet
Overlap geneKlhl32
Upstream geneLOC623873, LOC664973, F730047E07Rik
Downstream gene1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325F03.T7 (MSMg01no325_f03.b1)MSMg01-325F03.TJ (MSMg01no325_f03.g1)
ACCAG443239AG443240
length711721
length of high quality
(start - end)
667 (45 - 711)642 (80 - 721)
definitionCHROMAT_FILE: MSMg01no325_f03.b1 PHD_FILE: MSMg01no325_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:49 2005CHROMAT_FILE: MSMg01no325_f03.g1 PHD_FILE: MSMg01no325_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTAGATCTCAGGGGAATTTTGTTTTCTAAATTACTACATGGAA
AGTGGGAAAGCCTGCTATTCTGTCCACTCTCTCTTTTACTTTGTGAACTG
CTTGCCTTTATCCTGCCATTGCACTGTACAGTTTGGCCAAGAAAACAACA
GTCTAAGTTTTCTGTAAAGCTACTTAGTTAAGATGTTAAAAGCTAACCTG
AAAGCTGAGCCAGCGGATACCCTCTCGCCTTACAGCAGTGCTGAGCACAA
TTCAAAGCAGTGCACTCCAGACAGGTAGAATCCTGAATGTTCAAATCCTA
AAGAAACGTAAAATCCTTCAGAGCCTGTACCACACACACGTGCGTGCATA
TATGCACTTGTGCACATGCAAATAATACACACGGATTTTATAGCTAAACC
TTTTCCCTTTGTTTTGTAGCTTTGACTTAAAACCTATCAGTTTCATGATG
AGTCCCTAGTTGATTGCAAACTTAAGAAAATTGAAGCTAGAGGCTTGTTT
ATTCGGTTCCATTCATCGCTATGTTTTAAAGGATGTTAATATCTACAGTT
TGTTAATGCAAGAAGGACTGTATAACTAACTTCATACTGTTTCATTTTCT
CCAAATCCATTTAATGCCCCGTTTACCTGGCCCCGTCTTAAAACTTCCAT
TCTTCTCTTGG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATATAGGAGAATGGCTGC
CCACAGCATACATAGTATTATATTTGCATACTAGAATATTCTGCTGTCTT
AGCCTGTATCTTCCAGAGAATGGGCATCATATCAGTGGAATAAATAAGGA
CGTTATAAGAGATTGACTAACATAGTTATAGAAGCTGGTCCTGGGATGTA
TGTGACAAACTGGTGACCCAGGAGAACTGTCTATACAAGTTTCAGTCTGA
GTCTAAAGGCCTAAAAGTCTGAGAGCCAGCAGATCTAGTCTCATTCCACA
GTTGAAGGGAGGGGGCAAAATCACTACACCAACTTAAAGAAGTCTTTCTT
GATCTGCAGAGCAGCTTTTTAATTTAAGAGTAACATGTCTGGTTAAGTGG
AGGAATTCACACACATTAAGGAGGGCAATCCACTTTACTGAGTCTACTAA
TTTAAATGTTAACTTCAGAAAATTTAAAAGTATGTATCCAGTATAACATT
TAATCTGCTATCTGGGGATTTGTGCCTGATTAAGTTGACACAACAAACAC
ATATTTTGTATTATTTATGTATTTGTGTGTGTGTGTACAGATAGTAGAAT
GAGGAAGAATCCTGAAGTAATGATTTCCCTAATACGTTATGAAATGAAGT
GAGCAGAATGTAAAAGATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_f03.b1 MSMg01no325_f03.b1 CHROMAT_FILE:
MSMg01no325_f03.b1 PHD_FILE: MSMg01no325_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:49 2005
         (667 letters)



>mm_chr4_24597391_24598457
          Length = 1067

 Score = 1243 bits (643), Expect = 0.0
 Identities = 658/663 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctagatctcaggggaattttgttttctaaattactacatggaaagtgggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 867 gaattctctctagatctcaggggaattttgttttctaaattactacatggaaaatgggaa 808

                                                                       
Query: 65  agcctgctattctgtccactctctcttttactttgtgaactgcttgcctttatcctgcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 agcctgctattctgtccactctctcttttactttgtgaactgcttgcctttatcctgcca 748

                                                                       
Query: 125 ttgcactgtacagtttggccaagaaaacaacagtctaagttttctgtaaagctacttagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttgcactgtacagtttggccaagaaaacaacagtctaagttttctgtaaagctacttagt 688

                                                                       
Query: 185 taagatgttaaaagctaacctgaaagctgagccagcggataccctctcgccttacagcag 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 taagatattaaaagctaacctgaaagctgagccagcggataccctctcgccttacagcag 628

                                                                       
Query: 245 tgctgagcacaattcaaagcagtgcactccagacaggtagaatcctgaatgttcaaatcc 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 627 tgctgagcacaattcaaagcagtgcactccagagaggtagaatcctgaatgttcaaatcc 568

                                                                       
Query: 305 taaagaaacgtaaaatccttcagagcctgtaccacacacacgtgcgtgcatatatgcact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taaagaaacgtaaaatccttcagagcctgtaccacacacacgtgcgtgcatatatgcact 508

                                                                       
Query: 365 tgtgcacatgcaaataatacacacggattttatagctaaaccttttccctttgttttgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgtgcacatgcaaataatacacacggattttatagctaaaccttttccctttgttttgta 448

                                                                       
Query: 425 gctttgacttaaaacctatcagtttcatgatgagtccctagttgattgcaaacttaagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctttgacttaaaacctatcagtttcatgatgagtccctagttgattgcaaacttaagaa 388

                                                                       
Query: 485 aattgaagctagaggcttgtttattcggttccattcatcgctatgttttaaaggatgtta 544
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatcgaagctagaggcttgtttattcggttccattcatcgctatgttttaaaggatgtta 328

                                                                       
Query: 545 atatctacagtttgttaatgcaagaaggactgtataactaacttcatactgtttcatttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atatctacagtttgttaatgcaagaaggactgtataactaacttcatactgtttcatttt 268

                                                                       
Query: 605 ctccaaatccatttaatgccccgtttacctggccccgtcttaaaacttccattcttctct 664
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 267 ctccaaatccatttaatgccccgtttacctggccccgtcttagaacttccattcttctct 208

              
Query: 665 tgg 667
           |||
Sbjct: 207 tgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)