TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTGTTATGCACTCACTGATAAGTGGATGTTAGCCCAGAAACTG
AGAATACCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAAGAAGGA
AGACCAATGGGTGGCTACTTCATTCCTCCTTAGACTAGGGAACAAAATAC
CCATGGAAGTAGTTACAAAGACAAAGTTTGAAGCTAAGACGAAAGGATGG
ACCATCGAGAGACTACTCCACCCGGGGTCCCATCCCATAACCAGCCACCA
AACCCAGACACTATTGCATATACCAGCAAGATTTTGCTGAACGGACCCTG
ATATAGCTGTCTCTTGTGAGGCTATGCTAGTGCCTGGCAAATACAGAAGT
GGATGCTCACAGTCATCTATAAGATGGAACACAGGGACCCCAATGGAGGA
GCTAGAGAAAGTACCTAAGGAACTGAAGGGGTCTGCAACCCTATACGTGG
AACAATATGAACTAACCCAGTAACTCAGAGCTCGTGTCTCTAGCTGCATA
TGTAGCAGAAGATGGCCTAGTTGGCCATCATTGAGAAGAGAGGAGGCCCC
ATGGTCTTGCAAACTTTATATGTCCCAGTACAGGGGAATGCCAGGGCCAA
GAAGTGAGAGTGGGTGGGTAAGGTAGCAGGGCAGGGGGAGGGTATATGGA
ACTTTCGGGATAGCATTTGAAATGTAAATAAAG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAACACATTTTTACCAAGTAGATGGAA
GCTCAACTCTTAAATGTGAGGTTCATTTCAGGGGATGCCAATTCAGTTTT
CTAGACAACATTGATTTCATCAATATATTGGAGATGATTGTAGCTGTGCT
ACCTTCTTTGTAGTGTTTTAAAAAATTGATTGAAATTATTTTTTTAAAAA
AATTAAAAATCATGTAACACTATAGATAATATAAGCTAAGTAATGTTTAA
TTAATTATGTTTATTAAGATAGTCTTACTATTCAAATTCTCCCAAAGAAT
AAGTAAGCATAATTTCTGAGTGAATGTCTTTCCATGCAAACTGTAAAAGA
GAGTTCACATGGAATCTTAATAACATAATCAACTAAACAATACCAGCATA
ATGAAAACCTCAGCTGATTATTCCAATGTGGACATCGGAAATCTCACAAG
GCCTGACTCTTGGATTAAGAGTTATAGGTACTTAATAGCAGTTGAGAGAT
GGAAAATCAGTCTTTCCCAAAGATAAGCACCTTTACAAATTAACTAATCC
CAAGAAGTCAGCCTAGAAACAAATACATATGAGAAACACTGAATTGACTC
TGTAAGTTGTGTGTGCATGTGCGCGTACTCACACGCACACACTCACTCAC
AAACACAACATTAATAATAAATAATATGTCATGA

Query= MSMg01no325_l05.g1 MSMg01no325_l05.g1 CHROMAT_FILE:
MSMg01no325_l05.g1 PHD_FILE: MSMg01no325_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:15 2005
         (661 letters)



>mm_chr4_67690815_67691874
          Length = 1060

 Score = 1205 bits (623), Expect = 0.0
 Identities = 653/663 (98%), Gaps = 4/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacacatttttaccaagtagatggaagctcaactcttaaatgtgaggttcatttcaggg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 200 taacacatttttaccaagtagatggaagctgaactcttaaatgtgaggttcatttcaggg 259

                                                                       
Query: 61  gatgccaattcagttttctagacaacattgatttcatcaatatattggagatgattgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gatgccaattcagttttctagacaacattgatttcatcaatatattggagatgattgtag 319

                                                                       
Query: 121 ctgtgctaccttctttgtagtgttttaaaaaattgattgaaattattttttt-aaaaaaa 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 ctgtgctaccttctttgtagtgttttaaaaaattgattgaaattattttttttaaaaaaa 379

                                                                       
Query: 180 ttaaaaatcatgtaacactatagataatataagctaagtaatgtttaattaattatgttt 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 380 ttaaaaatcatgtaacactatagataatataagctaagtaatgtttaaataattatgttt 439

                                                                       
Query: 240 attaagatagtcttactattcaaattctcccaaagaataagtaagcataatttctgagtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attaagatagtcttactattcaaattctcccaaagaataagtaagcataatttctgagtg 499

                                                                       
Query: 300 aatgtctttccatgcaaactgtaaaagagagttcacatggaatcttaataacataatcaa 359
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 aatgtctttccatgcaaactgtaaaagagagt-cacatggaatcttaataacataatcaa 558

                                                                       
Query: 360 ctaaacaataccagcataatgaaaacctcagctgattattccaatgtggacatcggaaat 419
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 559 ctaaacaataccagcataatgaaaacctcagatgattattccaatgtggacatgggaaat 618

                                                                       
Query: 420 ctcacaaggcctgactcttggattaagag-ttataggtacttaatagcagttgagagatg 478
           ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 619 ctcgcaaggcctgactcttggattaagagctt-taggtacttaatagcagttgagagatg 677

                                                                       
Query: 479 gaaaatcagtctttcccaaagataagcacctttacaaattaactaatcccaagaagtcag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaaaatcagtctttcccaaagataagcacctttacaaattaactaatcccaagaagtcag 737

                                                                       
Query: 539 cctagaaacaaatacatatgagaaacactgaattgactctgtaagttgtgtgtgcatgtg 598
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 738 cctagaaacaaatacatatgagaaacactgaattgattctgtaagttgtgtgtgcatgtg 797

                                                                       
Query: 599 cgcgtactcacacgcacacactcactcacaaacacaacattaataataaataatatgtca 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cgcgtactcacacgcacacactcactcacaaacacaacattaataataaataatatgtca 857

              
Query: 659 tga 661
           |||
Sbjct: 858 tga 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space:   683550
Effective search space used:   683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)