BAC Information

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BAC

Clone NameMSMg01-325N03
Chromosome4 (Build37)
Map Location 44,809,755 - 45,002,631
singlet/doubletdoublet
Overlap geneZcchc7, D4Wsu132e, Grhpr
Upstream geneOlfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream geneZbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325N03.T7 (MSMg01no325_n03.b1)MSMg01-325N03.TJ (MSMg01no325_n03.g1)
ACCAG443607AG443608
length727730
length of high quality
(start - end)		679 (46 - 724)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no325_n03.b1 PHD_FILE: MSMg01no325_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:24 2005CHROMAT_FILE: MSMg01no325_n03.g1 PHD_FILE: MSMg01no325_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,809,755 - 44,810,429)(45,001,978 - 45,002,631)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGAGCATGCATATTGTTTTTAAAAGGAAATAACCACTAAGCAG
AAATAGAATAATTGTTAATTATAGGTTTCATTATTATGGGAAAATATTCA
TGTTAGTTAGAAAACTAGAGTCTAAGACATGATTATCTTAGGTAGTAAAT
GTGCAGAAAATAGAGAGGTGGTTCATTATTGATACTTGTATAAGTGGTGT
TTATGACAAGTTGATGTTGAAGGACATAATGCTTAGCGTTGATTCTTCTC
TCATGTCTGGTAAACTAATGATCTCCTTTTAAAAGCAAAGAGAGGGAGGT
AACTATTCTATGTCTCTAGCTGCAAAAGACTCACTCCTCTTTGTGCACTA
TGTGAAACAATGCAGTATTGTTCCTTGGTTCTTTTTGTCCTTTTCAGTCA
CACTTAAAGAGAATAGTTAAATTTGTTGCCATAAACAATGAGGGGTAGCA
GTATATTATTAAAAATGTCTTGAAGTTTAGAAGAATAAAAAATATGGCAG
GCATGGAGGTGTACACTTGTAATCTTGTCAATCTGGAGGCTGAAGCAGGA
AGGTCCCAAATTTGGAACTAGCTTTGAACTATATAGTAGACATATAGTAA
GAACTTGTCTCAATAAAAAACAAAAGGAGACGACAAGGGGGGTGGCTTAA
TAGATAAAAATGCAAGCATGAGGGCAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGAACATCCATGGCTCCAGTG
CCTCTGGGGAGGCTGGAGACAGACAAAGAGAGAAAAGGCAAGCGCTGCGG
CCAGAGTCTCAGACTGCTCCCAGGGCATCCTCAGGACCTGTGAAGTGCAG
TCTCAGGCTGTGGTCCAGACCTGCAGAAGCCCTTAGGGCAGGACTGCCAT
CAGTGACTGTCCCTCCAGGAGACTAGAAGCAGAAAACTAGAGCAACTGCA
CTTGCTGACAAGTAGCAATATGGCATGCCCAGAAGCATCCTGGGCCTGGA
GGGCCAAGGGAGCAAAGGGGGAGGGGAGGCTCAGAATGCCTAAGGCTGAA
GAGGGGTCCAAACTCAGGAGATGCCTGGGGGGCCCGGTGGCTGGTGAGCC
CACGTGCTGGAAAACCTAAACCTGGACTCTCCAGCCACAACACTAGTGAG
TTGCTGCTAGAAACTTCCAGATGGTGTCATTATTTTCCCATACACTGCCA
ACAGGCATTTAGACCGACGTGTTTTCCCCATGAGTAGCTACAGGAGTACG
GTCAGCCTCCCTCTAACAAACGCATCCACTTCTTGGATCTGTCTGAGCAT
GGCCTGCCTGTTAAACAGCCCTCACTTTATTATTCTGCACACTCCAGTCC
CTGGCTGGGTTAGCATTGCCTCAGGGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_n03.b1 MSMg01no325_n03.b1 CHROMAT_FILE:
MSMg01no325_n03.b1 PHD_FILE: MSMg01no325_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:24 2005
         (679 letters)



>mm_chr4_44809551_44810629
          Length = 1079

 Score = 1251 bits (647), Expect = 0.0
 Identities = 668/675 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgagcatgcatattgtttttaaaaggaaataaccactaagcagaaatagaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgagcatgcatattgtttttaaaaggaaataaccactaagcagaaatagaat 264

                                                                       
Query: 65  aattgttaattataggtttcattattatgggaaaatattcatgttagttagaaaactaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattgttaattataggtttcattattatgggaaaatattcatgttagttagaaaactaga 324

                                                                       
Query: 125 gtctaagacatgattatcttaggtagtaaatgtgcagaaaatagagaggtggttcattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctaagacatgattatcttaggtagtaaatgtgcagaaaatagagaggtggttcattat 384

                                                                       
Query: 185 tgatacttgtataagtggtgtttatgacaagttgatgttgaaggacataatgcttagcgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 385 tgatacttgtataagtggtgtttatgacaagttgatgttgaaggacataatacttagcat 444

                                                                       
Query: 245 tgattcttctctcatgtctggtaaactaatgatctccttttaaaagcaaagagagggagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgattcttctctcatgtctggtaaactaatgatctccttttaaaagcaaagagagggagg 504

                                                                       
Query: 305 taactattctatgtctctagctgcaaaagactcactcctctttgtgcactatgtgaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taactattctatgtctctagctgcaaaagactcactcctctttgtgcactatgtgaaaca 564

                                                                       
Query: 365 atgcagtattgttccttggttctttttgtccttttcagtcacacttaaagagaatagtta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgcagtattgttccttggttctttttgtccttttcagtcacacttaaagagaatagtta 624

                                                                       
Query: 425 aatttgttgccataaacaatgaggggtagcagtatattattaaaaatgtcttgaagttta 484
           ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct: 625 aatttgttgccataaacaatgaggggtagtaatatattattaaaaatgccttgaagttta 684

                                                                       
Query: 485 gaagaataaaaaatatggcaggcatggaggtgtacacttgtaatcttgtcaatctggagg 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 gaagaataaaaaatatggcaggcatggaggtgtacacttgtaatcttgtcaatctggaag 744

                                                                       
Query: 545 ctgaagcaggaaggtcccaaatttggaactagctttgaactatatagtagacatatagta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgaagcaggaaggtcccaaatttggaactagctttgaactatatagtagacatatagta 804

                                                                       
Query: 605 agaacttgtctcaataaaaaacaaaaggagacgacaaggggggtggcttaatagataaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 805 agaacttgtctcaataaaaaacaaaaggagacgacaaggggggtggcttaatagataaag 864

                          
Query: 665 atgcaagcatgaggg 679
           |||||||||||||||
Sbjct: 865 atgcaagcatgaggg 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_n03.g1 MSMg01no325_n03.g1 CHROMAT_FILE:
MSMg01no325_n03.g1 PHD_FILE: MSMg01no325_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:24 2005
         (654 letters)



>mm_chr4_45001778_45002831
          Length = 1054

 Score = 1187 bits (614), Expect = 0.0
 Identities = 644/654 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaacatccatggctccagtgcctctggggaggctggagacagacaaagagagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 agaggaacatccatggctccagtgcctctggggaggctggagacagacaaagagagaaaa 795

                                                                       
Query: 61  ggcaagcgctgcggccagagtctcagactgctcccagggcatcctcaggacctgtgaagt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 794 ggcaagcgctgtggccagagtctcagactgctcccagggcatcctcaggacctgttaagt 735

                                                                       
Query: 121 gcagtctcaggctgtggtccagacctgcagaagcccttagggcaggactgccatcagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gcagtctcaggctgtggtccagacctgcagaagcccttagggcaggactgccatcagtga 675

                                                                       
Query: 181 ctgtccctccaggagactagaagcagaaaactagagcaactgcacttgctgacaagtagc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctgtccctccaggagactagaaacagaaaactagagcaactgcacttgctgacaagtagc 615

                                                                       
Query: 241 aatatggcatgcccagaagcatcctgggcctggagggccaagggagcaaagggggagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aatatggcatgcccagaagcatcctgggcctggagggccaagggagcaaagggggagggg 555

                                                                       
Query: 301 aggctcagaatgcctaaggctgaagaggggtccaaactcaggagatgcctggggggcccg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 554 aggctcagaatgcctaaggctgaagaggggtccaaactcaggagatgcctggggggcctg 495

                                                                       
Query: 361 gtggctggtgagcccacgtgctggaaaacctaaacctggactctccagccacaacactag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 494 gtggctggtgagcccacgtgctggaaaacctaaacctggactctccagccacaacacgag 435

                                                                       
Query: 421 tgagttgctgctagaaacttccagatggtgtcattattttcccatacactgccaacaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgagttgctgctagaaacttccagatggtgtcattattttcccatacactgccaacaggc 375

                                                                       
Query: 481 atttagaccgacgtgttttccccatgagtagctacaggagtacggtcagcctccctctaa 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atttagaccgatgtgttttccccatgagtagctacaggagtacggtcagcctccctctaa 315

                                                                       
Query: 541 caaacgcatccacttcttggatctgtctgagcatggcctgcctgttaaacagccctcact 600
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 314 caaacgcatccacttcttggatctgtctgagcatggccttcctgttaaacagccctcact 255

                                                                 
Query: 601 ttattattctgcacactccagtccctggctgggttagcattgcctcagggagct 654
            ||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 254 ctattattctacacactccagtccctggctgggttagcattgcctctgggagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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