CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCAACTGCGGACCATGTGTTCAAATATATGTTTAAAGGAT
CCATTCTCATTCAAACCACATCTATATAGGAATATATCACATTAAATACC
TTCTAAGGATAATTAAGATTAAAATGTTAGAAGCATATTTGAATTTTTAT
AATACTTCTTAGCATTTTTAAATTGCATATGTATTTAAACTAAAAATAAA
ATACAACTTTACACTAGCCTGCTCAAACTTAAAAATTAAGCATATTCATA
AAATATGGCCAAGGCAGCTATTATTTTCTTTAAATTTACAGAAAGTGAAA
GAAAGGTTCACAGACCTAGCATCGTTTCCCTGAGGTCATGCTTCTTGTCG
CAACAGAATAGAATTCAAGCCGCGCGTGTGTTGGCTCCAAGGCTTTACAA
GAGTAAGTCCTTGATTTCTTTGGCCCACAGCAATATCAAATTCTGTGTAT
GAGAAAAGGCTTTCAATATAAACTGTTATGATGCATACTAACACAAAAAT
TTCTGAAGATATGAGAATTCTAACCCGGTGATGGAGGTCAGTGAGTAGGT
GGGGAAAATGAAAGAAGTGCGAGAGGACAGAAGCCATCAGTGAGGTGAGA
AGAGAGCTTCCCCCAAGGAGAGAGGGAAGGAAGGTTAAACACATATCGAT
CTTGACAGGGAAAACATTCTTCTGACTTTTCATCCTCCN

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATACTATCCCTGCCTCCCGT
GTAAAGAGTGATGGAAGGTGAGCCTAAAGAAACTGTAGATCAGCACTGAG
CAATCTGTGGCCATATGCTGCCCATTGGTTTTGCCATATGGCTCTGAGTC
TAATTTCAAACTCCTCTGTCAGCACATTCAAAGGTGAAGAATGTAGAGAC
AAAAGAAACACCACCATAGGGTTTGTAAGTGGACAGTCATCTAGCAGGTG
CTCTCCAGCTGGGCTGGGGCAGCAGCAGAATTAAGGGTTTGTGACTGATA
AAAGTAAAACAAATGCCTGAGGGGAGAGGAGAGGCTCTGGAGCAGCTGGG
CCCACAGTGTCATGTACTACCCTCAGAGCCCCAAAGTACCCAAGGGGTGT
GGGGGTGTGTGTGCAGAAAAACAGCGAGAATATTCTATTGACTGATCACA
AAATGAGCATTGTTTTTATTTTCTCTTAGTTATGTCACTTTTGAACTTAG
CAATGTAGCTTTATTAAATACTTTCCAGTGTTTTGTGTATATTTTTGAAA
TTTGAACATCTGTGCATCATTTTTCCCAGTCTTTTCTTTTAGAGATTCCC
ATATTCTTCTAGTGTGTAAGGAGGGAAAGCAGAGACTCATTCATGGAATT
TAGCAGAATTTGATAAATAAGACAATTTACTAATGCCCTCA

Query= MSMg01no326_b10.b1 MSMg01no326_b10.b1 CHROMAT_FILE:
MSMg01no326_b10.b1 PHD_FILE: MSMg01no326_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:43 2005
         (370 letters)



>mm_chr4_66617867_66618636
          Length = 770

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcaactgcggaccatgtgttcaaatatatgtttaaaggatccattctcattc 64
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 637 gaattccatcaactgtggaccatgtgttcaaatatatgtttagaggatccattctcattc 578

                                                                       
Query: 65  aaaccacatctatataggaatatatcacattaaataccttctaaggataattaagattaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaaccacatctatataggaatatatcacattaaataccttctaaggataattaagattaa 518

                                                                       
Query: 125 aatgttagaagcatatttgaatttttataatacttcttagcatttttaaattgcatatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aatgttagaagcatatttgaatttttataatacttcttagcatttttaaattgcatatgt 458

                                                                       
Query: 185 atttaaactaaaaataaaatacaactttacactagcctgctcaaacttaaaaattaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atttaaactaaaaataaaatacaactttacactagcctgctcaaacttaaaaattaagca 398

                                                                       
Query: 245 tattcataaaatatggccaaggcagctattattttctttaaatttacagaaagtgaaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tattcataaaatatggccaaggcagctattattttctttaaatttacagaaagtgaaaga 338

                                                                       
Query: 305 aaggttcacagacctagcatcgtttccctgaggtcatgcttcttgtcgcaacagaataga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaggttcacagacctagcatcgtttccctgaggtcatgcttcttgtcgcaacagaataga 278

                 
Query: 365 attcaa 370
           ||||||
Sbjct: 277 attcaa 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no326_b10.g1 MSMg01no326_b10.g1 CHROMAT_FILE:
MSMg01no326_b10.g1 PHD_FILE: MSMg01no326_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:44 2005
         (663 letters)



>mm_chr4_66482014_66483076
          Length = 1063

 Score = 1189 bits (615), Expect = 0.0
 Identities = 651/663 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatactatccctgcctcccgtgtaaagagtgatggaaggtgagcctaaagaaactgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatactatccctgcctcccgtgtaaagagtgatggaaggtgagcctaaagaaactgtag 260

                                                                       
Query: 61  atcagcactgagcaatctgtggccatatgctgcccattggttttgccatatggctctgag 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 atcagcactgagcaatctgtggccatatgctgccccttggttttgccatatggctctgag 320

                                                                       
Query: 121 tctaatttcaaactcctctgtcagcacattcaaaggtgaagaatgtagagacaaaagaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tctaatttcaaactcctctgtcagcacattcaaaggtgaagaatgtagagacgaaagaaa 380

                                                                       
Query: 181 caccaccatagggtttgtaagtggacagtcatctagcaggtgctctccagctgggctggg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 caccaccatagggtttgtaagtggacagtcctctagcaggtgctctccagctgggctggg 440

                                                                       
Query: 241 gcagcagcagaattaagggtttgtgactgataaaagtaaaacaaatgcctgaggggagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagcagcagaattaagggtttgtgactgataaaagtaaaacaaatgcctgaggggagag 500

                                                                       
Query: 301 gagaggctctggagcagctgggcccacagtgtcatgtactaccctcagagccccaaagta 360
           ||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||
Sbjct: 501 gagaggctctggagcagctgggcccacagtgtcatgtcctagtttcagagccccaaagta 560

                                                                       
Query: 361 cccaaggggtgtgggggtgtgtgtgcagaaaaacagcgagaatattctattgactgatca 420
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 561 cccaaggggtgtgggggtgtgtgtggagaaaaacatcgagaatattctattgagtgatca 620

                                                                       
Query: 421 caaaatgagcattgtttttattttctcttagttatgtcacttttgaacttagcaatgtag 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 caaaatgagcattgtttttattttctcttagctatgtcacttttgaacttagcaatgtag 680

                                                                       
Query: 481 ctttattaaatactttccagtgttttgtgtatatttttgaaatttgaacatctgtgcatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttattaaatactttccagtgttttgtgtatatttttgaaatttgaacatctgtgcatc 740

                                                                       
Query: 541 atttttcccagtcttttcttttagagattcccatattcttctagtgtgtaaggagggaaa 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 atttttcccagtcttttcttttagagattcccatattcttctagtgtgtatggagggaaa 800

                                                                       
Query: 601 gcagagactcattcatggaatttagcagaatttgataaataagacaatttactaatgccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcagagactcattcatggaatttagcagaatttgataaataagacaatttactaatgccc 860

              
Query: 661 tca 663
           |||
Sbjct: 861 tca 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)