BAC Information

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BAC

Clone NameMSMg01-326H12
Chromosome4 (Build37)
Map Location 84,006,060 - 84,155,508
singlet/doubletdoublet
Overlap geneBnc2
Upstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H12.T7 (MSMg01no326_h12.b1)MSMg01-326H12.TJ (MSMg01no326_h12.g1)
ACCAG444086AG444087
length727726
length of high quality
(start - end)
188 (481 - 668)136 (507 - 642)
definitionCHROMAT_FILE: MSMg01no326_h12.b1 PHD_FILE: MSMg01no326_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:11 2005CHROMAT_FILE: MSMg01no326_h12.g1 PHD_FILE: MSMg01no326_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,006,060 - 84,006,247)(84,155,374 - 84,155,508)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTACCTCCCTCAAACCTGGTGACTATATAATTAATTGCTT
TATCACATAATTTAGGTGGGGCATGCACGAACATAATGGCTAAAGCAGAA
ACATATACCATTACTAGGATATCCTTGAGCTGATAAAGGTAATGCTAGCC
AGAATTATTAAACCACTTTTAGAAGACACTGCTCAAAACCTTTGCTCCAA
AGCTTTTTCACCTAAGAAAAATGCTTCCTCATTGACCTACTTTCTCACCA
GCCGTCAGGATACACAGACAGAACTCCTTATACTCCTTGTCCTTAAGGAT
CTCACCTACCCTTGTATAATATGTCCCATTGCCCTCTGCCACCCATGATG
AACAGGCACAGATGTTGGCGCACAGTCTTTGGAAAAGACTTTTATCTCCA
GGTAGAAGGAGGAGCATCTCCACTCAAAGACAAACAACCAATGTGAGGTT
ACAGGACAGGAACTTGCTCATTCTAGCTGGTTTGAATTTCGCTCCAAGTA
TTCTTAGTAGATAACTTTCCAAACCCACTTCCTCTTAGGACTCGAACACC
CAAGGACAAGAAGCCGGTGTCCCTCAGAATTGGAGCAGGTAACACTCCTG
CTGGGAGAGATGAATAATGGGTACTGAGCTTTAGTGCAAACAGCTGCTCT
CCAGAGCCAGCACCAGTTCAAGTTAGA
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGCCACGAGGAATTCTCCTGAGAGGAGATGGATACA
GGCTTTTGTGCTTGCTGGCTTTTTTTTTTTTTGATGAATATATTGGAAGT
AGGTTGTAGATCAATCTCGTGTGCCCCTCCAGTCCTCTGACGTGTGACAC
TAACTAGCTGCTAGGCAGCCGGGTTCAGCTTTCCCTGGAGATGACCTGCG
GTTCTTCCCAAGGACTCTAAGTCACTGTTTCTGAACCACAGAGATCATTT
ATGAATCCCTCTGAAAAACCTGTTTTTTCTCATTTAGAAATGCTACCTGA
TTGGATCATTAATTTTTCTTCACCAAAAATTATTTTGATACTCTAAAAGA
GTTATATTCTAGAAGTGAAAACAACAAAAACTACAATATCCCTTAAGTCT
TAATCCTTGAGAATAATTTGAGACAATCATTGTAATTTCATCAGAATTAA
AGCAGACACTGGTTGCTAGGACAAAAGAACATGGATAAAGGAGAATCTCC
CAGTCACTTTAATATTTATATTCCACACACTGAAGATGTCCACTGTGTTT
CAGTATGTCAATTCCCAATGGAGTAATGATAAGGTGGCCAGNTGTGTCTC
TTCTTGCTGTTTGTCACTATCTGGTTGCTTATAGAGATCTGGCTCACTTC
TGAGGTTTTAAAACTGGAAGAAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h12.b1 MSMg01no326_h12.b1 CHROMAT_FILE:
MSMg01no326_h12.b1 PHD_FILE: MSMg01no326_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:11 2005
         (188 letters)



>mm_chr4_84005860_84006447
          Length = 588

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacaaccaatgtgaggttacaggacaggaacttgctcattctagctggtttgaatttc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacaaccaatgtgaggttacagaacaggaacttgctcattctagctggtttgaatttc 260

                                                                       
Query: 61  gctccaagtattcttagtagataactttccaaacccacttcctcttaggactcgaacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gctccaagtattcttagtagataactttccaaacccacttcctcttaggactcaaacacc 320

                                                                       
Query: 121 caaggacaagaagccggtgtccctcagaattggagcaggtaacactcctgctgggagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggacaagaagccggtgtccctcagaattggagcaggtaacactcctgctgggagaga 380

                   
Query: 181 tgaataat 188
           ||||||||
Sbjct: 381 tgaataat 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no326_h12.g1 MSMg01no326_h12.g1 CHROMAT_FILE:
MSMg01no326_h12.g1 PHD_FILE: MSMg01no326_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:11 2005
         (136 letters)



>mm_chr4_84155174_84155709
          Length = 536

 Score =  246 bits (127), Expect = 5e-70
 Identities = 133/135 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactggttgctaggacaaaagaacatggataaaggagaatctcccagtcactttaatatt 60
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 335 cactggttgctaggacaaaggaacatggataaaggagaatctccaagtcactttaatatt 276

                                                                       
Query: 61  tatattccacacactgaagatgtccactgtgtttcagtatgtcaattcccaatggagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tatattccacacactgaagatgtccactgtgtttcagtatgtcaattcccaatggagtaa 216

                          
Query: 121 tgataaggtggccag 135
           |||||||||||||||
Sbjct: 215 tgataaggtggccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)