Query= MSMg01no326_m22.b1 MSMg01no326_m22.b1 CHROMAT_FILE:
MSMg01no326_m22.b1 PHD_FILE: MSMg01no326_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:34 2005
(684 letters)
>mm_chr4_14106108_14107191
Length = 1084
Score = 1201 bits (621), Expect = 0.0
Identities = 666/689 (96%), Gaps = 13/689 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtcctaaccgtttgactgtaacttggacctgtaaccagaagaaaagcatgaat 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gaattcagtcctaagagtttgactgtaacttggacctgtaaccagaagaaaagcatgaat 251
Query: 65 tcagcttagagattagtgtaactggcacaaattgacatgaacaggagagagaaagacaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcagcttagagattagtgtaactggcacaaattgacatgaacaggagagagaaagacaga 311
Query: 125 cttttacaaatatttttagtctgagttcctttaagtggaaccaaatacgagtgtagaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312 cttttacaaatatttttagtctgagttcctttaagtggaaccaaatatgagtgtagaaaa 371
Query: 185 gataggaattgttcaaattattttttaatttttacatgtatcatcataatcgcgccaaca 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 372 gataggaattgttcaaattattttttaatttttacatgtatcataataatcgcgccaaca 431
Query: 245 gttgaggatttggctatacaagactaaagaagactgaatgggacaggggctggaaagatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gttgaggatttggctatacaagactaaagaagactgaatgggacaggggctggaaagatg 491
Query: 305 gttcagcatttaagagctcttatagagccatggttcagttcccagcatccacatggtagt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gttcagcatttaagagctcttatagagccatggttcagttcccagcatccacatggtagc 551
Query: 365 tcactaacacccattactccagtttcaggaaatct-------------aacttccacagg 411
||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 552 tcactaacatttattactccagtttcaggaaatctgaccccctcttctaacttccacagg 611
Query: 412 caccaggtacatacaagctatacatacaatgtgcagtgcaagcaaaacacccatacatgt 471
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 612 caccaggtacatacaagctatatatacaatgtgcagtgcaagcaaaacacccatacatgt 671
Query: 472 aaaataaaaataaatcgtaaaaagaagactgatttttgacctgaaaattggggaatcagg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaaataaaaataaatcgtaaaaagaagactgatttttgacctgaaaattggggaatcagg 731
Query: 532 agcataaaaaacagggataattgagactacttcgggggcatagaaatagtgagaagggac 591
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 732 agcataaaaaacagggataattgagactacttctggggcatagaaatagtgagaagggac 791
Query: 592 actaagaaacatcaatatttaaggttcagaaactgctgggtgagacagtaagtaattcat 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 actaagaaacatcaatatttaaggttcagaaactgctgggtgagacagtaagtaattcat 851
Query: 652 gcaaggagaagcaaatcaagaagggacgt 680
|||||||||||||||||||||||||||||
Sbjct: 852 gcaaggagaagcaaatcaagaagggacgt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_m22.g1 MSMg01no326_m22.g1 CHROMAT_FILE:
MSMg01no326_m22.g1 PHD_FILE: MSMg01no326_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:34 2005
(637 letters)
>mm_chr4_14286298_14287334
Length = 1037
Score = 667 bits (345), Expect = 0.0
Identities = 345/345 (100%)
Strand = Plus / Minus
Query: 1 tttccacactgctggcaaggacttctattagattacaggacagggggcttctttttacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttccacactgctggcaaggacttctattagattacaggacagggggcttctttttacca 286
Query: 61 tctcatgttcttcaaaatttccctgccatttttgtcctgccttagcaaatttctctaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctcatgttcttcaaaatttccctgccatttttgtcctgccttagcaaatttctctaaaa 226
Query: 121 tctacatactcccaacggacacagatagctaaggacaatcttaaactttcgattctgcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctacatactcccaacggacacagatagctaaggacaatcttaaactttcgattctgcta 166
Query: 181 catcccttacctaagtcctgggattatgggcagcagccatccttcccagtttatatcgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 catcccttacctaagtcctgggattatgggcagcagccatccttcccagtttatatcgta 106
Query: 241 gcaagcatccaatgcagaaatctgggcctgctagacttgcattctaccaactgatttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gcaagcatccaatgcagaaatctgggcctgctagacttgcattctaccaactgatttcca 46
Query: 301 ccccgcagatcttgtcatcactactattaacctgaatattcaaac 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ccccgcagatcttgtcatcactactattaacctgaatattcaaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
