Query= MSMg01no327_a01.b1 MSMg01no327_a01.b1 CHROMAT_FILE:
MSMg01no327_a01.b1 PHD_FILE: MSMg01no327_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:48 2005
(619 letters)
>mm_chr4_117663709_117664727
Length = 1019
Score = 1122 bits (580), Expect = 0.0
Identities = 604/612 (98%)
Strand = Plus / Plus
Query: 8 gaattcactttttatatggtgagcaacagtgatctgggttgttttgttttgtttttttaa 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcactttttatatggtgagcaacagtgatctgggttgttttgttttgtttttttaa 267
Query: 68 atacaagtggatatctgggtttctcagcacacaactcaagagtttcctctaacaggtgct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atacaagtggatatctgggtttctcagcacacaactcaagagtttcctctaacaggtgct 327
Query: 128 ctggctggctgccttgttcaaaattccgctggcagtaagtatgcagggttgtccctgtgc 187
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctggctggctgccttgttcaaatttccgctggcagtaagtatgcagggttgtccctgtgc 387
Query: 188 tgtatactctatcccattgacctatgggttgtttttaataccaatattacactgttctag 247
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 tgtatactctatcccattgacctatgggttgtttttaataccaatattacgctgttctag 447
Query: 248 cggctacagcttgtactttttgttggttcttgagacagggtctgatggtgtagcccaggc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cggctacagcttgtactttttgttggttcttgagacagggtctgatggtgtagcccaggc 507
Query: 308 tagcccccaactcacagagatccacttgcctctgcctcgcaagtgctgggattaaaggct 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tagcccccaactcacagagatccacttgcctctgcctcgcaagtgctgggattaaaggct 567
Query: 368 gcatcaccatgcctggccagcttgtttgcttgtttttaactcattcttctggtctccccc 427
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 568 gcatcaccatgcctggccagcttgtttgtttgtttttaactcattcttctggtctccccc 627
Query: 428 ttatagcatgcacaacggggatgtcaaaactgtgtctactcaatggcacccggtcagtct 487
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct: 628 ttatagcatgcacaacggggatgccaaaactgtgtctactcaatggcacacagtcagtct 687
Query: 488 gagggctttcttcactcttttacatgttttctgttctgttatttcctcttctcttatctg 547
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 688 gagggctttcttcactcttttacatgttttctgttctgttatttcctcttttcttatctg 747
Query: 548 atcagacccattctattatccaggcctacaactgcattttttattttatttactgacttc 607
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 748 atcagacccattctattatccaggcctgcaactgcattttttattttatttactgacttc 807
Query: 608 attagctccaag 619
||||||||||||
Sbjct: 808 attagctccaag 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no327_a01.g1 MSMg01no327_a01.g1 CHROMAT_FILE:
MSMg01no327_a01.g1 PHD_FILE: MSMg01no327_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:48 2005
(648 letters)
>mm_chr4_117705272_117706319
Length = 1048
Score = 1133 bits (586), Expect = 0.0
Identities = 622/648 (95%), Gaps = 22/648 (3%)
Strand = Plus / Minus
Query: 1 cagagcagccagggctgcacagagaaagcttgtcttgaaaaaaaccaaccaaccagacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 cagagcagccagggctgcacagagaaagcttgtcttgaaaaaaaccaaccaaccagacaa 878
Query: 61 actacaaggaattgaatcagaaccttgggtgtacaaggtaaacacttttccactgagcta 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 877 actacaaggaattgaatcagagccttgggtgtacaaggtaaacacttttccactgagcta 818
Query: 121 catccccagcccttttagagttttatttcgagatttggtcttgccaaagtacccaggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 catccccagcccttttagagttttatttcgagatttggtcttgccaaagtacccaggctg 758
Query: 181 gccttgaactcatagtaacaaccatcctacctcagcctcctgaattatcagattatagct 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 757 gccttgaactcatagtaacaaccgtcctacctcagcctcctgaattatcagattatagct 698
Query: 241 gtgtgccactatactcagcttgggtctatttatttattttgagacacttaataattgtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtgtgccactatactcagcttgggtctatttatttattttgagacacttaataattgtta 638
Query: 301 tggagtgttaactccagagggcactgcattctgccctttctcgcctgtgctgtcctgctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tggagtgttaactccagagggcactgcattctgccctttctcgcctgtgctgtcctgctt 578
Query: 361 gccacctgatgtctgggtttacagcaagacgaaggcccttgctaacttctggaaggagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gccacctgatgtctgggtttacagcaagacgaaggcccttgctaacttctggaaggagtc 518
Query: 421 ctcttgagagtacactgtgtgttctcaagtccaagggacaggagcacgaagggtggctgc 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 517 ctcttgagagtacactgtgtgttctaaagtccaagggacaggagcacgaagggtggc--- 461
Query: 481 cctcagggcggccaccacacagggacaatcaacgagtattgggcaaatctgtggtttctt 540
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 -------------------cagggacaatcaacgagtattgggcaaatctgtggtttctt 420
Query: 541 tttcctagaatgtcagaatccaagtattgaaagaatattcaactttgaaagcaatgcttt 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttcctagaatgtcagaatccaggtattgaaagaatattcaactttgaaagcaatgcttt 360
Query: 601 ttagttgtatttttagtttttagaattgaggcctttttgtctttcttg 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttagttgtatttttagtttttagaattgaggcctttttgtctttcttg 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
