BAC Information

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BAC

Clone NameMSMg01-327D17
Chromosome4 (Build37)
Map Location 118,310,793 - 118,311,137
singlet/doubletsinglet
Overlap genenone
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290
Downstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327D17.T7 (MSMg01no327_d17.b1)MSMg01-327D17.TJ (MSMg01no327_d17.g1)
ACCAG444645AG444646
length749763
length of high quality
(start - end)		656 (40 - 695)348 (68 - 415)
definitionCHROMAT_FILE: MSMg01no327_d17.b1 PHD_FILE: MSMg01no327_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:06 2005CHROMAT_FILE: MSMg01no327_d17.g1 PHD_FILE: MSMg01no327_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GGCCCATTCCCAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCAA
CATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGA
CTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAA
GTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAAT
TGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT
ATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAAC
AGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGC
CTTTCTCTACACAAACACCACACAGGCTGAGAAAGAAATTAGGGAAACAA
CACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTA
ACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAA
AGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC
AGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATT
AGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAACCTAGGATAN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCCTCTGAGACATGAGGTGCCTCTGCCAC
ATCCTCCTGTTTCCATGAATCCCACCATGTCTTCCATGAGCCAAATAAGA
GTCTCCCTCCCTTAAGTTGCTTCTGTCGTAGGAAGGAGAAGTCACTACTA
TAGACAGCTCTTTTTTACAGAACACGGCTGCGGTTCAAGGTCAACCAAGG
AACGTCCAAACAAACGGAGAGATGCATGCTGTTCGCTGCCTGGAAGGCTC
AGCATTATAAGACAACGGAAGGTCCTCAGATCTTACAGCTGTAATGAAAC
ACCAAGTGGATAGCAGACATACTCATTATTTATGGTGTTTGAGAGTGCAT
GGAAAGGAATACCCCCCCCAGAGTCACACAAAAATACAAATAACCAAGAC
AGTTTTGAAGCATGCAGCAGGGGACCTTCAAACCTAGAAAGCTATAGTAA
GTCAGCATGGAGGGGTTTGCGAAAGGTGTCCTAAGGATGTAAAGAGACCT
GTGAGATCATTTACAGATCTGGAAGGAAGACCATGTACGAGGTTCTGATT
TTTGGAAAACTCATATTTCCAAGGAATTACTTATTGATGCCCCACGGTTG
AGAAAGAATATTTGCTCTATTCCCCAAAGCAATATAGGCTTGCTGACATT
CTACCCTGGGACTTCAGATGCCTGGTTCAGTTATTTTCTCCCTCCTCCCT
TTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_d17.g1 MSMg01no327_d17.g1 CHROMAT_FILE:
MSMg01no327_d17.g1 PHD_FILE: MSMg01no327_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:06 2005
         (348 letters)



>mm_chr4_118310593_118311340
          Length = 748

 Score =  613 bits (317), Expect = e-180
 Identities = 338/345 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatcctctgagacatgaggtgcctctgccacatcctcctgtttccatgaatcccacca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctgatcctctgagacatgaggtgcctctgccacatcctcctgtttccatgaaccccacca 260

                                                                       
Query: 61  tgtcttccatgagccaaataagagtctccctcccttaagttgcttctgtcgtaggaagga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcctccatgagccaaataagagtctccctcccttaagttgcttctgtcgtaggaagga 320

                                                                       
Query: 121 gaagtcactactatagacagctcttttttacagaacacggctgcggttcaaggtcaacca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gaagtcactactacagacagctcttttttacagaacacggctgcggttcaaggtcaaccg 380

                                                                       
Query: 181 aggaacgtccaaacaaacggagagatgcatgctgttcgctgcctggaaggctcagcatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaacgtccaaacaaacggagagatgcatgctgttcgctgcctggaaggctcagcatta 440

                                                                       
Query: 241 taagacaacggaaggtcctcagatcttacagctgtaatgaaacaccaagtggatagcaga 300
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 taagaaaacggaaggtcctcagatcttacagctgtaatgaaataccaagtggatagcaga 500

                                                        
Query: 301 catactcattatttatggtgtttgagagtgcatggaaaggaatac 345
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 catactcattatttatggtgtttgagagtgcgtggaaaggaatac 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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