BAC Information

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BAC

Clone NameMSMg01-327J12
Chromosome4 (Build37)
Map Location 52,544,194 - 52,709,860
singlet/doubletdoublet
Overlap gene4930547C10Rik
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883
Downstream geneLOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327J12.T7 (MSMg01no327_j12.b1)MSMg01-327J12.TJ (MSMg01no327_j12.g1)
ACCAG444913AG444914
length802753
length of high quality
(start - end)
374 (44 - 417)345 (72 - 416)
definitionCHROMAT_FILE: MSMg01no327_j12.b1 PHD_FILE: MSMg01no327_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:31 2005CHROMAT_FILE: MSMg01no327_j12.g1 PHD_FILE: MSMg01no327_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,544,194 - 52,544,562)(52,709,516 - 52,709,860)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGA
ATTCTCTCCCATGTACCAAGGCCCAAAGCCAATCAGAAAGGCAGTTGGTT
AACCCCATAACAGACCTGCCACTATTGCACATCTTGCCCACAGGCCAGTG
TTCTAACGTGCAAATAGTGATAGACTGTTGACATTTTTTCTCCCCAGCTT
TCAGTACTGTGAAAACTAGCCAGTCAGAATGATTCAGCATATTTCTAGGT
ACAAGTCTAAAAGCCCCTAGCATGTCAGTGCCTTTCAGGAGATAGTAGAG
TTTGAGAGGGAGCAATGTATAGGAAATGAAGGGAATACCCTTCGTGTCTT
TCATCCAGTGCTGTATGACAGAGACATTTGGTTCTCAGCATAGGAGGTGC
CTTCAGTGTTTCTACAACCCCCGCCTACACCATCTCCTGGTGAGATAGAA
GTGTGTGACATGTACTAGGGGAGATTTGGACAGTCAGAATAAGGCATGAT
ATGATGGACTGTTGCTGCTTTTTGAACAGTCAGTGTTAGCAATCAAGCTT
CCATTTGTGTGCCTGATTGTCCCTTTTATCGTATCCGCATTGTTATTAGC
ATCTTTCTTGTCTTATCCATAATTAGTGAGCTTTCTTATTTAATTAAAAC
TAAATAATAATACACATTATTCCTATTAAATCTTCAGAGTTCGCCTTTTT
ATATATTTTATCCTTATTCCCCTGATACAATTATTCATCTAATCATTTTC
CATTGGTTCTATACATAAAATTCAGCTTCCTATCTTGAATTTCATCTTGA
CA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTCTTCTGTCTTTCTCCATCCACTGG
CTGAATGCCAGCTCAGTGTTGGAAATCCCATATTGAACTCATGTGGTGGG
TTTCTAGATATCCATTATAGTATTGTAAAAATTTTTATTTCCTTTTTTCC
AAAAATGAAATATAATTATTAGGGAAGGAATATGATGACCATTTAAATAG
AAAGCATTAGGTAGAATAGACAGTGATGCCTTGTGCTCTGCCAAGGCTGA
TGTTAGTGGTTGATATTCTTAGTAAAAATGTAGCTATACCCACATGTTCT
TCTATTTCTATAGCTTATATGCAAAATCGTGCTATAAATAACCATAGTTC
TTGATATGTCTAAGCACACCCGCACAGGAAGAGGAAAGATTGAGGGAGAT
GTAATAATCACCAGGTGTTTTTCTTGGGTGACTATTGTTACTAGCTGCCA
AATTCCCTATAATGACAGGAGGATCACGACCAATATTTCTTTTTGGAAAC
ATTGAGTGTTCTTTAGCTAGCTCAGTAGTACTACCTATGTTCTACTTAGA
TAACTTCCTTTCAGAGGGAGTCACATCTCTCCAGCAAATGGATGCTTATG
TTTGCTTTGAACACAAATTTATGTTCTTGTTTTTACTAATATTTGTCCCT
TTTTCACTGTAGCCTGCTTCTTTAACTTTATGTCCACTTTATTAATATGA
TCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_j12.b1 MSMg01no327_j12.b1 CHROMAT_FILE:
MSMg01no327_j12.b1 PHD_FILE: MSMg01no327_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:31 2005
         (374 letters)



>mm_chr4_52543989_52544762
          Length = 774

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctcccatgtaccaaggcccaaagccaatcagaaaggcagttggttaaccccat 65
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctcccatggagcaaggcccaaagccaatcagaaaggcagttggttaaccccat 265

                                                                       
Query: 66  aacagacctgccactattgcacatcttgcccacaggccagtgttctaacgtgcaaatagt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aacagacctgccactattgcacatcttgcccacaggccagtgttctaacgtgcaaatagt 325

                                                                       
Query: 126 gatagactgttgacattttttctccccagctttcagtactgtgaaaactagccagtcaga 185
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatagaccgttgacattttttctccccagctttcagtactgtgaaaactagccagtcaga 385

                                                                       
Query: 186 atgattcagcatatttctaggtacaagtctaaaagcccctagcatgtcagtgcctttcag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgattcagcatatttctaggtacaagtctaaaagcccctagcatgtcagtgcctttcag 445

                                                                       
Query: 246 gagatagtagagtttgagagggagcaatgtataggaaatgaagggaatacccttcgtgtc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagatagtagagtttgagagggagcaatgtataggaaatgaagggaatacccttcgtgtc 505

                                                                       
Query: 306 tttcatccagtgctgtatgacagagacatttggttctcagcataggaggtgccttcagtg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttcatccagtgctgtatgacagagacatttggttctcagcataggaggtgccttcagtg 565

                    
Query: 366 tttctacaa 374
           |||||||||
Sbjct: 566 tttctacaa 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no327_j12.g1 MSMg01no327_j12.g1 CHROMAT_FILE:
MSMg01no327_j12.g1 PHD_FILE: MSMg01no327_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:32 2005
         (345 letters)



>mm_chr4_52709316_52710060
          Length = 745

 Score =  667 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttcttctgtctttctccatccactggctgaatgccagctcagtgttggaaatcccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctttcttctgtctttctccatccactggctgaatgccagctcagtgttggaaatcccat 486

                                                                       
Query: 61  attgaactcatgtggtgggtttctagatatccattatagtattgtaaaaatttttatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attgaactcatgtggtgggtttctagatatccattatagtattgtaaaaatttttatttc 426

                                                                       
Query: 121 cttttttccaaaaatgaaatataattattagggaaggaatatgatgaccatttaaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cttttttccaaaaatgaaatataattattagggaaggaatatgatgaccatttaaataga 366

                                                                       
Query: 181 aagcattaggtagaatagacagtgatgccttgtgctctgccaaggctgatgttagtggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aagcattaggtagaatagacagtgatgccttgtgctctgccaaggctgatgttagtggtt 306

                                                                       
Query: 241 gatattcttagtaaaaatgtagctatacccacatgttcttctatttctatagcttatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gatattcttagtaaaaatgtagctatacccacatgttcttctatttctatagcttatatg 246

                                                        
Query: 301 caaaatcgtgctataaataaccatagttcttgatatgtctaagca 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 caaaatcgtgctataaataaccatagttcttgatatgtctaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)