XXXXXXXXXXXXXXXXXXXXXXXXXTGCCCGAGGTGCGCGGAATTCTGGG
ATCTTCCCCAAAAACCGAGGATTCATCATGATAGAAGCTGTGGACTCTCC
AAGCTGGGTGAACATCCCCGGGTGTTGCATCCTAAGCTTAAACAAGGTAC
TTCTCTCTAGTTGATACTGTTACTCACTGAGGAAATAGATTCCCTCCAAA
CAGTGCTTGTGTCATAGGTTCATTATAGAATAGCATAGCTGAATGTATCG
TGTACTCATGAGAAATTGGTCTCTAAAGTATATGTTGCCCGGCTTGTGTG
GTCGCGCACACTTTTTTTTTTTTCGCCTATTTTCTGTTTTTTCCTACCTT
GTTTATCTTTTTTTTCTCCCCCTCTCCCCTCATACTTAATTTTATTTGAT
TTTATTTAATTTACCCCCCCCCCTGTTTAAATAAAAAAGTATTATATTCC
CTTCCATTCACCCATTAATATTTTTACAACTCATTTATTCTCATTCTGAT
GCTTGAGTTTTCTCGTCTAACTTCCATCCATTATATTTCTATCTACGATC
TCTATTATAAATTCCTATATTGAGCTCTTACTATCTATCTCTAATTAACC
AACTATATAATATTTCCGCAACGTAGATTTTTTCTCTTAATTAACCATTT
AGTGTTTTTCTGTATTTGTGTCACCTACCCTTTATCCAAATAAATTCTCT
TATCTTTTTACGTGGTTTTTCGCTATTATTACATCAACTATTTTACCCTC
CCAAATTCTGTGCGCAATATAACCCGGCCCACCAATTCAGATCCTATACC
CATCTTATCACATTACATCTTATATTTTAGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACCCTTAGGGTGAGAACAGGAGGGAAAGTAGC
CTCCCTTGGCTATTATTACAGTAGCTTTCCACGTGGAAATTAGCTGCTGT
GGGCTGCAGAGGCACTGCGTGGTGGAATGCTGGGTCAGTCTCACTGTGCA
GTGCTTAGTAATGGGTTCTTCCAGAATTCAACACCTATTTTTACCAGGAA
AAAAAAAATCTCACACGCCAAATTTCCCTTTCTAATTCCTAAGTTTCTTC
TTTTCCCATGAGGCAGTTTATGACCACATCACCTTTGGAATGTCACTTTG
ATTTGAAATTGCCAATTTTTTCAAAAAAAAAAAATCAAGGTGAGGTTACT
GCCAATTCATAGACCCCCCATGGATTTAATTATCACGACTCAGGCATTAG
ATATGGCTAAGAGCTAAACAGTTGCCAAATAGTGGGGTAAATTGAATTTC
TTTCGAACCAGGAAAAATTGCAGAACTATGCATATCTTAGAAGTCCACAC
CAGCCCATGAGTGGTTTTTCAAAGAGCAGGGAAGAAGAGCCTTATAGAAC
AGAGCCACAGGGGAGCTATTCATGTCTCTATTGCCTGTTGGACTAGGCAG
AAGATGTCACTTAATCTCCCTATACTGGGCCAAAGTAGCACCTGCCTGAT
GCTTGCCAAACTTCTAATAACAGATGCGTATCAATGTCTTTATA

Query= MSMg01no328_f19.g1 MSMg01no328_f19.g1 CHROMAT_FILE:
MSMg01no328_f19.g1 PHD_FILE: MSMg01no328_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:30 2005
         (570 letters)



>mm_chr4_13338437_13339407
          Length = 971

 Score = 1000 bits (517), Expect = 0.0
 Identities = 557/577 (96%), Gaps = 13/577 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacccttagggtgagaacaggagggaaagtagcctcccttggctattattacagtagctt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacccttagggcgagaacaggagggaaagtagcctcccttggctattattacagtagctt 260

                                                                       
Query: 61  tccacgtggaaattagctgctgtgggctgcagaggcactgcgtggtggaatgctgggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacgtggaaattagctgctgtgggctgcagaggcactgcgtggtggaatgctgggtca 320

                                                                       
Query: 121 gtctcactgtgcagtgcttagtaatgggttcttccagaattcaacacctatttttaccag 180
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcactgtgcagtgcttagtgatggattcttccagaattcaacacctatttttaccag 380

                                                                       
Query: 181 gaaaaaaaaaa-tctcacacgccaaatttccctttctaattcctaagtttcttcttttcc 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaaaaaaaatctcacacgccaaatttccctttctaattcctaagtttcttcttttcc 440

                                                                       
Query: 240 catgaggcagtttatgaccacatcacctttggaatgtcactttgatttgaaattgccaat 299
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 catgaggcagtttaagaccacatcacctatggaatgtcactttgatttgaaattgccaat 500

                                                                       
Query: 300 tttttcaaaaaaaaaaaatcaaggtgaggttactgccaattcatagacccccca------ 353
           |||||||||||||||||||||||||||||||||||||||||||||||      |      
Sbjct: 501 tttttcaaaaaaaaaaaatcaaggtgaggttactgccaattcataga------aataaaa 554

                                                                       
Query: 354 tggatttaattatcacgactcaggcattagatatggctaagagctaaacagttgccaaat 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tggatttaattatcacgactcaggcattagatatggctaagagctaaacagttgccaaat 614

                                                                       
Query: 414 agtggggtaaattgaatttctttcgaaccaggaaaaattgcagaactatgcatatcttag 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 615 agtggggtaaattgaatttctttcgaaccaggaaaaattgcagaactatgcaaatcttag 674

                                                                       
Query: 474 aagtccacaccagcccatgagtggtttttcaaagagcagggaagaagagccttatagaac 533
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 675 aagtccacaccagcccatgagtggattttcaaagagcagggaagaagagccttatagaac 734

                                                
Query: 534 agagccacaggggagctattcatgtctctattgcctg 570
           |||||||||||||||||||||||||||||||||||||
Sbjct: 735 agagccacaggggagctattcatgtctctattgcctg 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)