Query= MSMg01no328_j14.b1 MSMg01no328_j14.b1 CHROMAT_FILE:
MSMg01no328_j14.b1 PHD_FILE: MSMg01no328_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:48 2005
(371 letters)
>mm_chr4_113452367_113453136
Length = 770
Score = 511 bits (264), Expect = e-149
Identities = 328/350 (93%), Gaps = 3/350 (0%)
Strand = Plus / Minus
Query: 23 aaatctgattctgtctctgaaattcatcccatttgctgagacaagtggtatgatgagaca 82
|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |
Sbjct: 570 aaatctgattctgtctctgaaattcatcacatttactgagacaagtggaatgatgagata 511
Query: 83 tttgaaaggtgtaaaatgctttgatagatctgaatgtcttacacactttttaacttgaat 142
||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 510 tttgagaggtttaaaatgctttgatagatctgaatgtcttacactgtttttagcttgaat 451
Query: 143 tgtgaaaagagttaatccaatcaaggtgggatatatatagagaggaaggtagaaaaatgg 202
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 450 tgtgaaaagagttaattcaatcaaggtgggatatata--gagaggaaggtagaaaaatgg 393
Query: 203 ttttatatgttcactccaaaatgaatgagacatctggcatgctagggaaactttcactta 262
|||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct: 392 ttttatatgttcaccccaaaatgaatgggacatctggcatactagggaaactttcactaa 333
Query: 263 aacaacaaatgttatgtacaagctgggattactgatccatgaagccaa-caagtgcaatg 321
||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 332 aacaacaaaggttatgtaccagctgggattactgatccatgaagccaaacaagtgcaatg 273
Query: 322 atgatactcagagagcatgtgcctattcaaggtcaacactctaaaatcca 371
||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 272 ttgatactcagagagcatgtgcctattcaaggtcaatattctaaaatcca 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space: 275482
Effective search space used: 275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_j14.g1 MSMg01no328_j14.g1 CHROMAT_FILE:
MSMg01no328_j14.g1 PHD_FILE: MSMg01no328_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:48 2005
(345 letters)
>mm_chr4_112569604_112570349
Length = 746
Score = 387 bits (200), Expect = e-112
Identities = 304/344 (88%), Gaps = 17/344 (4%)
Strand = Plus / Plus
Query: 1 cttggctataatgctcatatttgttgaattattctattct-t-acctctaagatatgtta 58
||||||| ||||||||| ||||||||||||||||||| || | | ||||||||||||
Sbjct: 209 cttggctgtaatgctcacatttgttgaattattctatcctatga----taagatatgtta 264
Query: 59 ccattttcaatttttcattttttattaaatatcaaatgtagggcatagccatggtttatc 118
||||||||||||||||||||||| ||| |||| |||| || |||||||||| ||
Sbjct: 265 ccattttcaatttttcattttttgtta------gaatgcagggtatggccatggtttgtc 318
Query: 119 agactcctctgtatgttttgactctagctgcagtttttccagagggtcaagctcctatca 178
||||||| |||||||||||| ||||||||| | |||||||||| ||||||||||||||
Sbjct: 319 agactcccctgtatgttttgcctctagctgtactttttccagatattcaagctcctatca 378
Query: 179 tatttactt-tgg-atgtgccgttgctctatccataaagtcttgtgagataataaatttc 236
|||||| || ||| ||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 379 tattta-ttgtggcatgtgccattgctctatccataaagccttgtgaggtaataattttc 437
Query: 237 agagg-agagctcttggcattttattcatggatccttagttaaattggaatctctattgc 295
||||| | |||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct: 438 agaggca-agctcttggcatttcattcatggctccttagttaaattggaaactctattgc 496
Query: 296 tgttatgtcttgtgtttgaaaattgtcaaagccagaagttggtt 339
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgttatgtcttgtgtttgaaaattgtcaaagccagaagttggtt 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space: 247632
Effective search space used: 247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
