BAC Information

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BAC

Clone NameMSMg01-329D07
Chromosome4 (Build37)
Map Location 33,485,368 - 33,485,902
singlet/doubletsinglet
Overlap geneRngtt
Upstream geneBach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329D07.T7 (MSMg01no329_d07.b1)MSMg01-329D07.TJ (MSMg01no329_d07.g1)
ACCAG446100AG446101
length732869
length of high quality
(start - end)
543 (44 - 586)217 (77 - 293)
definitionCHROMAT_FILE: MSMg01no329_d07.b1 PHD_FILE: MSMg01no329_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:34 2005CHROMAT_FILE: MSMg01no329_d07.g1 PHD_FILE: MSMg01no329_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGA
ATTCTTTGTTCTTCTCTGAACCCCATCTTTTAAGGGGGCTATTTGATTTT
CTGGAGTCCACCCTTTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGCAGTTTCTTG
AGGTCCCATTTGTCAATCCTCGATCTTAAAGTACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTTCCCTGTGCCCATATCTTTGAGACCAGTTTTTCTTT
TTTTAAACAGCTCACTTGTTAAAATCAGGCTTATTTATAGACTAGGTATC
ATATTTATGAGTTAACTCCACCTTTGATAACAATTGTAATCTGAGTACAT
GCTAGTGAATTCAGTATAATTAAAATTTACTTATTTTACACTAGAGTATA
TGTATGCTTGTTTATACTTCAGAAAAATTTTGCGTTTCAGATGTTATATT
TAGCCGAGTGTGGTGGCGCATGCCTTTAATTTCTACACCTGTGAGGCAGA
GGCATGCGGATTTCTGAGTTCGAGGTCTGCCTGGTCTACCGAGTGAGTTT
CATGACCGCTTGGTCTATTTTAGAAATGCTGTCTCGGGATTTCCTTCCCC
CTTTCACTACTTTCCCTCCCCACTTTATGTTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACTCCAGCCAGCCAAATGCAGT
GGTACTTGCCCATAATCCCAGTGCTGGGAAGGCAGAGTCAGGAGAATCTC
TAGAGCTTGATAGCCAGCCAGTCACCAATTGTCAGGCTCCAGATTCAGTG
AGAGACCTATCTTAAAATAATAATAATAACAGTAACAACGGTGGTGATAA
TGATGATGACGACGACGATGGTGGTGGTGGTGATGATGATGACGATAGTG
TGATTATTCTACACTTCTTTTTTTCCTGCTTCTTCCCTTCCTTCCTCATC
CTTCCCCCTTCTTTTGCTAACCCCTTATCTATACTTTAAACTTTTATAAT
AATGCTTTTTCTCATCCTTCCCCCCCCCCCCATTTTCCCCCTTGTCCCCT
TCCCTTTTTCATTATTATCCTTTTATTATTTCTCGATTCCTTCTGCGCTT
TTCCCCCATTTCTTTCCAGTTCCTCTCCCCTCCCATATATTCCTGTTTCC
CGTCTTCTTTTATCCCACTTTTCACTCCTCGTTTTTTTTTCATTTATCCT
TCCATATTCATTTATTTTTCTTGTATTTCTCTTTCTCGTCCTTTCCCGTT
TTCACCCCCATTTTTCCTTATTATTTGCACCACCATCTTCTATATCTCCT
TTTTTCTTTTCCCACCACTTCACCTCCCTTATCTTTTTTCATCCTTCCCC
CATCCCCCTCCTTTTTTTTTTTTCCCTCTCCCTTTATCACACCCTTATCT
CCCCCCTTATATCCCCCCGATAATATACCCAACTCTATTTCCACTATTTC
TTTCTGTTATTCTTACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_d07.b1 MSMg01no329_d07.b1 CHROMAT_FILE:
MSMg01no329_d07.b1 PHD_FILE: MSMg01no329_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:34 2005
         (543 letters)



>mm_chr4_33485163_33486105
          Length = 943

 Score =  957 bits (495), Expect = 0.0
 Identities = 525/535 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttgttcttctctgaaccccatcttttaagggggctatttgattttctggagtc 65
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttgttcagctctgaaccccatcttttaagggggctatttgattttctggagtc 265

                                                                       
Query: 66  cacccttttgagttctttatatatattggatattagtcccctatctgatttagaataggt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 cacccttttgagttctttatatatattggatattagtcccctatctgatttaggataggt 325

                                                                       
Query: 126 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcctt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcctt 385

                                                                       
Query: 186 gcagaaactttgcagtttcttgaggtcccatttgtcaatcctcgatcttaaagtacaagc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 386 gcagaaactttgcagtttcttgaggtcccatttgtcaatcctcgatcttaaagcacaagc 445

                                                                       
Query: 246 cattgctgttctattcaggaattttttccctgtgcccatatctttgagaccagtttttct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cattgctgttctattcaggaattttttccctgtgcccatatctttgagaccagtttttct 505

                                                                       
Query: 306 ttttttaaacagctcacttgttaaaatcaggcttatttatagactaggtatcatatttat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttttttaaacagctcacttgttaaaatcaggcttatttatagactaggtatcatatttat 565

                                                                       
Query: 366 gagttaactccacctttgataacaattgtaatctgagtacatgctagtgaattcagtata 425
           |||||||||  | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 566 gagttaactagagctttgataacaattgtaatctgagtacatgctggtgaattcagtata 625

                                                                       
Query: 426 attaaaatttacttattttacactagagtatatgtatgcttgtttatacttcagaaaaat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attaaaatttacttattttacactagagtatatgtatgcttgtttatacttcagaaaaat 685

                                                                  
Query: 486 tttgcgtttcagatgttatatttagccgagtgtggtggcgcatgcctttaatttc 540
           |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 686 tttgtgtttcagatgttatatttagccgagtgtggtggcgcaggcctttaatttc 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)