BAC Information

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BAC

Clone NameMSMg01-329F10
Chromosome4 (Build37)
Map Location 66,675,184 - 66,707,942
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329F10.T7 (MSMg01no329_f10.b1)MSMg01-329F10.TJ (MSMg01no329_f10.g1)
ACCAG446199AG446200
length736744
length of high quality
(start - end)		461 (45 - 505)344 (77 - 420)
definitionCHROMAT_FILE: MSMg01no329_f10.b1 PHD_FILE: MSMg01no329_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:45 2005CHROMAT_FILE: MSMg01no329_f10.g1 PHD_FILE: MSMg01no329_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,707,486 - 66,707,942)(66,675,184 - 66,675,524)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCAGGTTGTCAAGCTTGGCAGCAAGTACGTCGAGTTGTTGAGCT
ACTTCACTGGCCTTGAGGAGTTCATAGTCTTAAACAACTGGCCCAGGTAA
CAATTCCAAGCCTCCAGGCAATGATTAAAAACTATCTATGTGTTATTATC
TGTAACTTTGCAACTCATGGTGCTCTCTTTACTTAAGAACTAATTCTGTA
CCTCATGACACTTATAATGATGAATCTCAAGGGCTAATAATTTACTTCCA
AATTATCCAGTGAAGTCACTGGATCAATGTGGGTTTAGCATTAATACATC
CCAATTCCATTATACTTAGCTATCCAGACATATTTAGAACTTCATGGACC
ATAAAAGTCCCAGGACCCCGATACAATATAATATTATGGCAGATTTAGCT
ACAATCTAATTGGCTTTTACTTATGATTCATGAATAGGGATGCACCTTAC
TTTGGACAAAGTACAATCTAAGCAGAAAAACAATAGAGGAGTAGGGTCTG
TAAGGCGTGAATGATGAATCCGACGATAATTTTTATTAATAGAGAATATG
TTGATTACTTAACTAGAGGACCCTCCTGTTATCCTGACTGAAGAGGTATC
AAATTTTATGCTCCCCCCCAGTTTTACTACACTGGTGTCTCCAAGCACCT
CCCATGTTCTAAAATTCTATTATATTCCCGTGCTAT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTACTCCTTTCCATGTATGTTTT
TATCTCTCCACGAAATGTCTTCCAGAGCTTTGACGCTCATTGTTTATCGG
GTTCTCTAGGCTAGAAGGGTCTAATGCTGAAAGGATTGCATGAATTTGGA
CATAGAATGTCTCAAAAAATATCTAATTTTCCACTGAGAGGGAAATTTAA
CGCTGATCATCATAGATGTTCATTTTAGCTGTTAGGTAATATGTTAATTG
TCCTGATGCATCAATCTGAGGTAACTAGAGATGGGGTTTTATAAGATTAT
TCTGAATCTCACTCTTTTGCAAATCTAAGATTTTCAAATTTAGGTATATC
CAAATAAGAATATTTATCCCCACCGATCTAGCCCAGTAATTTGTTTTAAT
AATTATTTTTTTGTATGTGCTCTTTGTCTGCATGTATGTGTAGTGCATGT
ATGTAGTGCCCTTGGCAGCCATTATATGACATCATATCCTGTCATACAGG
TGGCGTACTATTATGTGGCTTGTTGTACCTGACCTTTAATTCTTTGCCCC
ATTTTTTTTACACGGTCCCTATACCCTTGCCTCCTTTTTTTTCCCCTTTT
TTTGTTTTTTATCCCCTTTCCGTCCTTGTCTTTCCTTTACCCTTTTCTCC
TTTTTCTTCTTTTCCTTCTTCCTTTTTCTTCCCCTCCCCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_f10.b1 MSMg01no329_f10.b1 CHROMAT_FILE:
MSMg01no329_f10.b1 PHD_FILE: MSMg01no329_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:45 2005
         (461 letters)



>mm_chr4_66707215_66708075
          Length = 861

 Score =  845 bits (437), Expect = 0.0
 Identities = 452/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcaggttgtcaagcttggcagcaagtacgtcgagttgttgagctacttcact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaattcactcaggttgtcaagcttggcagcaagtacgtcgagttgttgagctacttcact 669

                                                                       
Query: 65  ggccttgaggagttcatagtcttaaacaactggcccaggtaacaattccaagcctccagg 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 668 ggccttgaggagttcatagtcttaaacaactgtcccaggtaacaattccaagcctccagg 609

                                                                       
Query: 125 caatgattaaaaactatctatgtgttattatctgtaactttgcaactcatggtgctctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 caatgattaaaaactatctatgtgttattatctgtaactttgcaactcatggtgctctct 549

                                                                       
Query: 185 ttacttaagaactaattctgtacctcatgacacttataatgatgaatctcaagggctaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttacttaagaactaattctgtacctcatgacacttataatgatgaatctcaagggctaat 489

                                                                       
Query: 245 aatttacttccaaattatccagtgaagtcactggatcaatgtgggtttagcattaataca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aatttacttccaaattatccagtgaagtcactggatcaatgtgggtttagcattaataca 429

                                                                       
Query: 305 tcccaattccattatacttagctatccagacatatttagaacttcatggaccataaaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tcccaattccattatacttagctatccagacatatttagaacttcatggaccataaaagt 369

                                                                       
Query: 365 cccaggaccccgatacaatataatattatggcagatttagctacaatctaattggctttt 424
           |||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 368 cccaggagtctgatacaatataatattatggcagatttagttacaatctaattggctttt 309

                                                
Query: 425 acttatgattcatgaatagggatgcaccttactttgg 461
           |||||||||||||||||||||||||||||||||||||
Sbjct: 308 acttatgattcatgaatagggatgcaccttactttgg 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no329_f10.g1 MSMg01no329_f10.g1 CHROMAT_FILE:
MSMg01no329_f10.g1 PHD_FILE: MSMg01no329_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:45 2005
         (344 letters)



>mm_chr4_66674984_66675727
          Length = 744

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctactcctttccatgtatgtttttatctctccacgaaatgtcttccagagctttgacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctactcctttccatgtatgtttttatctctccacgaaatgtcttccagagctttgacgc 260

                                                                       
Query: 61  tcattgtttatcgggttctctaggctagaagggtctaatgctgaaaggattgcatgaatt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattgtttattgggttctctaggctagaagggtctaatgctgaaaggattgcatgaatt 320

                                                                       
Query: 121 tggacatagaatgtctcaaaaaatatctaattttccactgagagggaaatttaacgctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacatagaatgtctcaaaaaatatctaattttccactgagagggaaatttaacgctga 380

                                                                       
Query: 181 tcatcatagatgttcattttagctgttaggtaatatgttaattgtcctgatgcatcaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcatagatgttcattttagctgttaggtaatatgttaattgtcctgatgcatcaatc 440

                                                                       
Query: 241 tgaggtaactagagatggggttttataagattattctgaatctcactcttttgcaaatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaggtaactagagatggggttttataagattattctgaatctcactcttttgcaaatct 500

                                                    
Query: 301 aagattttcaaatttaggtatatccaaataagaatatttat 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagattttcaaatttaggtatatccaaataagaatatttat 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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