ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTATCTTTCCCAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCA
TCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATC
TTTCTGTGGTTTAGTTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGG
GTAGGGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAACTGGA
ATTAGATCTTCTTTGAAGGTCTGATACAATTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTGGTTGGGATACTATTAATAACTGCTTCTATTTCTT
TACGTGATATGGGACTGTTCATATTGATCACTTGATCCTGATTCCACTCT
TGGTACCTGGTAATCTGTTCAGAAATTTTCTTCCTTTCTCCACAGGTTTT
CCCGCTTTTGTTGATTAAATGCCTTTTTGTTACAGTATTCAACTTGTCTT
TTCCCTCCTCCTTTCCTCCATCTTCTTCTCTATTCTCCCCTC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGACTTAGAATTAAGAGCCT
AAGATGCCTCCTGAAGAGGATGCCCTCCTAAAGACACAGTGCTCCTTGGG
AAGTCTCCAGCAGGTGAAAGGCTTGGATGGGCCTTTTTTTTCCCTCCATG
AACTTGGTTTTTCTTTCCCACATTCTCAGGTGTGCTGGGAGGCCCTGGGA
AGCCAGCAGACTTTTTCAAAAGACACTTCCACCTCCTAATCTCTTTGCCT
ACAAACCAAATATTGATCTATTTAGTAAACCAGCCAGTGGAGGAGAGCTT
GTATAGCCCTGTTTATTCAGCAGTTGGGCCCCCCTGACAGCTGTTCACTG
GGGGATTATGAAGTCACGGCAGCAATTACACTATAAACAGGGGATGGGGG
AGAAGAAAGCCAGAAAGTGAACTGTGAGCTCTGTTACCAGGCAACATAAA
ATATGTAACCGGAAACCCAGCAAGCACGTACATTTCCCTAAAAGCCTCCC
AGATGTCCTCACTTTGGGGCCAATGTTCAATTTCAGTTTCGATTTGTTTA
TTTATCCATCTTCAGATTGAAGACTGGAGCTGAGAATGTTGGAAGAGAAT
AGAAACGAATCGATATCCAACATCTAAACATTACAAACTGCAGGGGAGAG
TAAAGTTGATCCTCCGGGCAGTGGGGGGGCG

Query= MSMg01no329_i19.g1 MSMg01no329_i19.g1 CHROMAT_FILE:
MSMg01no329_i19.g1 PHD_FILE: MSMg01no329_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:02 2005
         (545 letters)



>mm_chr4_56234458_56235404
          Length = 947

 Score = 1038 bits (537), Expect = 0.0
 Identities = 544/547 (99%), Gaps = 2/547 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaggacttagaattaagagcctaagatgcctcctgaagaggatgccctcctaaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaggacttagaattaagagcctaagatgcctcctgaagaggatgccctcctaaagaca 260

                                                                       
Query: 61  cagtgctccttgggaagtctccagcaggtgaaaggcttggatgggcctttttttt--ccc 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 261 cagtgctccttgggaagtctccagcaggtgaaaggcttggatgggccttttttttttccc 320

                                                                       
Query: 119 tccatgaacttggtttttctttcccacattctcaggtgtgctgggaggccctgggaagcc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatgaacttggtttttctttcccacattctcaggtgtgctgggaggccctgggaagcc 380

                                                                       
Query: 179 agcagactttttcaaaagacacttccacctcctaatctctttgcctacaaaccaaatatt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagactttttcaaaagacacttccacctcctaatctctttgcctacaaaccaaatatt 440

                                                                       
Query: 239 gatctatttagtaaaccagccagtggaggagagcttgtatagccctgtttattcagcagt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctatttagtaaaccagccagtggaggagagcttgtatagccctgtttattcagcagt 500

                                                                       
Query: 299 tgggcccccctgacagctgttcactgggggattatgaagtcacggcagcaattacactat 358
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgggcccccctgacagctgttcactgggggattatgaagtcacggcagtaattacactat 560

                                                                       
Query: 359 aaacaggggatgggggagaagaaagccagaaagtgaactgtgagctctgttaccaggcaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaggggatgggggagaagaaagccagaaagtgaactgtgagctctgttaccaggcaa 620

                                                                       
Query: 419 cataaaatatgtaaccggaaacccagcaagcacgtacatttccctaaaagcctcccagat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataaaatatgtaaccggaaacccagcaagcacgtacatttccctaaaagcctcccagat 680

                                                                       
Query: 479 gtcctcactttggggccaatgttcaatttcagtttcgatttgtttatttatccatcttca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcctcactttggggccaatgttcaatttcagtttcgatttgtttatttatccatcttca 740

                  
Query: 539 gattgaa 545
           |||||||
Sbjct: 741 gattgaa 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 947
Length adjustment: 10
Effective length of query: 535
Effective length of database: 937
Effective search space:   501295
Effective search space used:   501295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)