BAC Information

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BAC

Clone NameMSMg01-329N19
Chromosome4 (Build37)
Map Location 136,562,980 - 136,563,314
singlet/doubletsinglet
Overlap geneZbtb40
Upstream geneTceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8
Downstream geneWnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329N19.T7 (MSMg01no329_n19.b1)MSMg01-329N19.TJ (MSMg01no329_n19.g1)
ACCAG446569AG446570
length754772
length of high quality
(start - end)
463 (35 - 497)337 (76 - 412)
definitionCHROMAT_FILE: MSMg01no329_n19.b1 PHD_FILE: MSMg01no329_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:28 2005CHROMAT_FILE: MSMg01no329_n19.g1 PHD_FILE: MSMg01no329_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCCGCGGAATTCACTCA
TCTTCCATGCTTAAACCCGTCCACCCATCCATCCAATTACCTAGCTCTCC
ATTGTCCCTCCCCCATCCCTCCTTCCATCCATTTTGATTCTCTCATATAT
CCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCC
ATCCATCCATCAGTTCAACCATCCATCAGTTCAACCATCCATCCAGTCAT
TCAACCATCCATACATTCAACCATCCATCCATGCATCCATCATCCATCCA
TCCTCCCATCCATCCTCCCATCCACTCATCACTACCACCACAATTACTAC
CACCACCACTACTACCATAACTACCATCATCACCACTATCACCACCATCA
TCACCATCACCACCATCACCACTAGCTTGGCCTAGGCAGGATGAACAGCT
CTTCATTCCCCAAGGCCCAGTCCTACATCTTGGTCAGACACATTACAGAG
AATGCCACGGCTACATGTGGTTGCTGAAGGCCACGGTGCCATTACACATT
AAGTACAGCGCTGTATTGGTAGTGACCTGTTATCTGGTCTTGACTCTGCC
TTCTCCCTGCCGTGTGATTTTATCCTGTCTCACTTTCCTGTGTATGGGAA
AAGAACACCACCCCTTTTCTAACGTATCATATATTATATAATTTCCCAGT
ACCATAATGCGCTTTCCCCAAATCCACCACCTTTCTATACCCCAAGATTC
CTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTGGCTGTTTCCAGGAACTCC
ACAATAGGTCTGAGCTGTGTTACACACTGGATCAGGTCCTCTTTGTGTTC
CAGTAGCAGAACAGACAAGGTCTTTCCCTCTCCTGCGCTCCCTGGGGGAG
AAAGAATTAGAGACACACAAGAGAAGCTAGTCAATTTGAAGGAAATGACA
GCGTGGTCTGTCGAGAGAGATCTAACAGAATAGTAAAGCGCTTCTGTGCA
CCTGAATGCAGAATCACTTTTGGAGAGGAAAATACTTTATTATTCTGTTT
AAACTCTATGAAAGGAAAAATGTTTCATTTATCTGTGGAAATACAAAGCT
TCGAAGCCAGTCAGAGGCTAACGTCTGGTATGTAAGGCCACTGCTTTGTA
TCTAACCTGAACGAGAGCAACTTCAGCCTTTAAGTGCTGGCTGCGAACTA
GTCACTTGAGGCCCTGTTTTGGACGTGTGGTTTTTTGATAGGCATGAAGA
CTATGTACAGCCTTCTCAGTTTGTTTAGGAAACAGCCTATATAATTGGGG
CATTAGCGGATTCTCACATGGCGCCTGTGCATATTTAACATGCTACCTTC
TGGAATGGTCCTCTTACCCATTGCCACCTTTTTTCTTTTACCCCCCTTTA
CTTGCCTGTTCTTTCCAATTTTGGCCCCTTTTATTCGCACATATTGCCCA
TTATTACTCATTGTTTTCACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_n19.g1 MSMg01no329_n19.g1 CHROMAT_FILE:
MSMg01no329_n19.g1 PHD_FILE: MSMg01no329_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:28 2005
         (337 letters)



>mm_chr4_136562780_136563516
          Length = 737

 Score =  648 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccttggctgtttccaggaactccacaataggtctgagctgtgttacacactggatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccttggctgtttccaggaactccacaataggtctgagctgtgttacacactggatcag 260

                                                                       
Query: 61  gtcctctttgtgttccagtagcagaacagacaaggtctttccctctcctgcgctccctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctctttgtgttccagtagcagaacagacaaggtctttccctctcctgcgctccctgg 320

                                                                       
Query: 121 gggagaaagaattagagacacacaagagaagctagtcaatttgaaggaaatgacagcgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagaaagaattagagacacacaagagaagctagtcaatttgaaggaaatgacagcgtg 380

                                                                       
Query: 181 gtctgtcgagagagatctaacagaatagtaaagcgcttctgtgcacctgaatgcagaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgtcgagagagatctaacagaatagtaaagcgcttctgtgcacctgaatgcagaatc 440

                                                                       
Query: 241 acttttggagaggaaaatactttattattctgtttaaactctatgaaaggaaaaatgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttggagaggaaaatactttattattctgtttaaactctatgaaaggaaaaatgttt 500

                                              
Query: 301 catttatctgtggaaatacaaagcttcgaagccag 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 catttatctgtggaaatacaaagcttcgaagccag 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)