NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATAAAAGACTCACCTCTAGACTCATGAATTGTGTTGTATTTTCAG
GAGATAAGTAATCTATGCTGAAACAGTAAGGGTAGCATTGACTATAATAA
ATTGTTACTGCAACATGTAGAGATTATTCATAGGGAATGTTAAGAATTTA
GGATCACAGGTCAGCATAGAGAAGGCAGCGATATGCTGACTTATAGAGAC
TTTGAAGGTTTTACTGATTTTCATATGTTTGATAAGAGCATTGGAGCAAA
CTAGATGATAATCTTAAGGGTAAATAGAATTAATACATGCACAACTTTCA
TGGATGGAGTGTTAACAGCACACCTTCCTACCCAGCCTTTTAACCATTAG
GACTACATTCCCTCTCATGTAACAAGGTCTTCATCAAAGTGCAGCTGTTA
TGCAGCAATTAAAAACAATGAATTTATGAAATTCTTAGACAAATGGATGG
ATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCATAAAGAACACAC
ATGATATGCACTCACTAAATGGATATTAGCCCAGAAGCTAGGAATTCCCA
AGATATAATTCACAAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGT
GTGTATACTAAGGTCCTTCTCAGAAGGGGGAACAAAATATCCATGGAAAG
AGTTACAGAGACAAAGTGAATGACCATCCAGAGAC

CCGATGAAGTGGGAGGCCTGGNGGCCGCCTGGTTGCGAAGCGGGGGNNGA
ACNANAGAAGTTTCGNGGACGGCCGCCCCAAGCCAAGGCAAGNCCNGGGC
CNNCANGAAANCAGTTTCCCCCCCNCAANCNNANNAAGGNNNGGGGACAN
NANGGNGAGGCACGGNCCGGNGGGCNCAGAGAANANNNAANANCANCNCN
CANNNCNAANCAGGGNNGCCGGNANCAGNCNCCCAGNNANGACAACCTTT
TTTGTCTCCAGATGCTACATGTTACATTTGTGAAGCTTGGTGTTCTTTTG
GGATGCTTAACTGTTTTTTTTTGGGGNGNCNCNGACNCNGNCACCGGCNC
NGGGAAACATTNNCCCCCCCCCGGAANGNCNNNNCCAGCNNNGANANGAG
GGGNNNGGCNGAGCCCCAGGGGAACACACGACACCAGGNCNGGGCGAAAN
CCCGGGGAGGNCGGNNCNCNCCGGAAGGNAAACAAAGGAGGAAGGGACCN
GGGGGANGNNAGGGGGCAGGACCGGGAACANGCGCGAGAGGGAAACCCCA
ACCAGGACANAACGCANGAGAGAAGAAAAAAGCGANNGGGAACACGCAGG
GCGCGCGGAGGGCGCCACCAGCCAGGCAGGAGACGCGCGAAGGGTATTAT
GCNCGAACCCCGAAAAACCCAGAGAACNCAGACAANAGGGCGGGGGCCGC
CCCCCACCGGCCNCCNGGCCCGCNCAG

Query= MSMg01no331_d20.b1 MSMg01no331_d20.b1 CHROMAT_FILE:
MSMg01no331_d20.b1 PHD_FILE: MSMg01no331_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:07 2005
         (686 letters)



>mm_chr4_35209250_35210335
          Length = 1086

 Score = 1216 bits (629), Expect = 0.0
 Identities = 668/681 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aataaaagactcacctctagactcatgaattgtgttgtattttcaggagataagtaatct 65
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aataaaagactcaaatctagactcatgaattgtgttgtattttcaggagataagtaatct 265

                                                                       
Query: 66  atgctgaaacagtaagggtagcattgactataataaattgttactgcaacatgtagagat 125
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 atgctgaaacagtaagggtagcattgactataataaattgttactgccacatgtagagat 325

                                                                       
Query: 126 tattcatagggaatgttaagaatttaggatcacaggtcagcatagagaaggcagcgatat 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 tattcatagggaatgttaagaatttaggatcacaggtcagcatagagaaggcagtgatat 385

                                                                       
Query: 186 gctgacttatagagactttgaaggttttactgattttcatatgtttgataagagcattgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctgacttatagagactttgaaggttttactgattttcatatgtttgataagagcattgg 445

                                                                       
Query: 246 agcaaactagatgataatcttaagggtaaatagaattaatacatgcacaactttcatgga 305
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 446 aacaaactagatgataatcttaagggtaaatagagttaatacatgcacaactttcatgga 505

                                                                       
Query: 306 tggagtgttaacagcacaccttcctacccagccttttaaccattaggactacattccctc 365
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggagtgttaacagcacaccttcttacccagccttttaaccattaggactacattccctc 565

                                                                       
Query: 366 tcatgtaacaaggtcttcatcaaagtgcagctgttatgcagcaattaaaaacaatgaatt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcatgtaacaaggtcttcatcaaagtgcagctgttatgcagcaattaaaaacaatgaatt 625

                                                                       
Query: 426 tatgaaattcttagacaaatggatggatctggaggatatcatcctgagtgaggtaaccca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tatgaaattcttagacaaatggatggatctggaggatatcatcctgagtgaggtaaccca 685

                                                                       
Query: 486 atcataaagaacacacatgatatgcactcactaaatggatattagcccagaagctaggaa 545
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atcacaaagaacacacatgatatgcactcactaaatggatattagcccagaagctaggaa 745

                                                                       
Query: 546 ttcccaagatataattcacaaaacacatgaaactcaagaagaaggaagaccaaagtgtgt 605
           || |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 746 tttccaagatacaattcacaaaacacatgaaactcaagaagaaggaagaacaaagtgtgg 805

                                                                       
Query: 606 atactaaggtccttctcagaagggggaacaaaatatccatggaaagagttacagagacaa 665
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 atacttaggtccttctcagaagggggaacaaaatatccatggaaagagttacagagacaa 865

                                
Query: 666 agtgaatgaccatccagagac 686
           |||||||||||||||||||||
Sbjct: 866 agtgaatgaccatccagagac 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)