BAC Information

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BAC

Clone NameMSMg01-331E09
Chromosome4 (Build37)
Map Location 106,301,179 - 106,301,523
singlet/doubletsinglet
Overlap geneTtc22
Upstream genePpia-ps4_954.1, Map1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111
Downstream genePars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331E09.T7 (MSMg01no331_e09.b1)MSMg01-331E09.TJ (MSMg01no331_e09.g1)
ACCAG447610AG447611
length834725
length of high quality
(start - end)
39 (180 - 218)345 (68 - 412)
definitionCHROMAT_FILE: MSMg01no331_e09.b1 PHD_FILE: MSMg01no331_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:09 2005CHROMAT_FILE: MSMg01no331_e09.g1 PHD_FILE: MSMg01no331_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTCCTCTTCTCCTTTCCTTACCCCTTCCNTNCCTTCNACCAACTATC
TAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTTAGGGTGCG
NGGNAATCTCTACTTTTCTCAAAAATCACCCTAAAATCAAAGTAAGCCAT
TGTTCACAGCAGCCTAGTGGCACTCTACCTAAGTGGAAAGTCTCCTTCCC
TGCTAGATCTGACAGATCCATTGGGCTCCGGGTGACCCTGGATATGTGTC
GTGTGCACTTGGGAAGTGATCTCATTATCATTTGTTGTCTCTGACACTCA
CTTATCGGCTGAACCGTGTCTGTTCCTCCTTACTGCCTACATTATCTTAT
CCGGTCTGAGGCTGAATGAAGCCATTTTTCGAGAATGTAAATCTGTGTTT
ACCGGCTGTGACCTCCCTATTCTCCCCCTTGCCATGTTCATTAATTTGAT
ACACCTTTAAATTTTTGTCCCCCCCCTTTGTATCTATAGAATTATTTCTG
TATTTTTCTCCCCCCTTTCCCTTTAACTCCTTTTTTTACCCTATTCCTTT
TACCTTTACGTTTATTGTGAGTTTTATGAAATTATAATGCCCTATTTCCC
TTCTTTTCTCTCCTATTCCGCTTTCACATTACCCCCATTCCATTTATCTC
ATTCCCTTCCTTTTCTCTTTTCTTCCACGTTTCCTTCCTTACCCTCCCCC
TTTTCTACTAATTCCCATTATATACTTACATTCCCTTATTATCCCTTTTC
AATCTTTATCCCACACATTTAACATCTTCCATCTAATTATTAATTTTTCA
ATACTATTATTATCTACACTCACCTTTATTTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCCGAAATCTCTAGGGAACCCAGGATGATGACAGACACTCAC
TCCCAAGGTGTCACACCCAATTCCTAAACTTCCCCCACCAGTCCGTTTGC
TACCCTGCCACAAGCTTTCTGGAGGCTGGCTCAGTGACCTTCTGGGACCC
CTGGTTGGAGCAGAGGACCTCAAGTTTCTGTTATTCCACACAGCTGCTGA
GGCAGGCAAGGGAGAACACTAGTACCCCCAGCAGGGCTGGGAGGACTTCT
TCCTGTCCTGTCCCTGTGCTCTGGCCCGGTCTGTCACCACGGAAGACATT
CCAGTTGCGCCAGAAGGACACATTCCTAGGCAGGTCTGACACCTTCCAAC
TGTTCCTGGCAGTTGACAAACCAGTTTTTGGAGAGAGGCAAATGATAACC
TGAATCCTGCCTGGCCCTTCTGCTTGGGCTGAGGCATTGAACTGTGGCTC
TTAGGCTGTTTTCTAATCCCTATGAGGAAGACACTAACTATACCTTCCAA
GGCTGCTGTGAGAAGCATGTACCACTGTACCCGGTGACCCGGAAGGAGCC
TTCCTCCTTCCCATCAGTCCACTCCCAGGAGATCATTAGTCAGCTCTCTG
GTGCCTCTCTGGAATGTACATACCATCTGCCCGTATAAAGTTCACCCTTG
CCGAGGCAAATAATGTCTGATAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_e09.g1 MSMg01no331_e09.g1 CHROMAT_FILE:
MSMg01no331_e09.g1 PHD_FILE: MSMg01no331_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:09 2005
         (345 letters)



>mm_chr4_106300979_106301723
          Length = 745

 Score =  613 bits (317), Expect = e-180
 Identities = 338/345 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagggaacccaggatgatgacagacactcactcccaaggtgtcacacccaattcctaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tctagggaacccaggatgatgacagacactcactcccaaggtgtcacacccaatccctaa 260

                                                                       
Query: 61  acttcccccaccagtccgtttgctaccctgccacaagctttctggaggctggctcagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcccccaccagtccgtttgctaccctgccacaagctttctggaggctggctcagtga 320

                                                                       
Query: 121 ccttctgggacccctggttggagcagaggacctcaagtttctgttattccacacagctgc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ccttctgggatccctggttggagcagaggacctcaagtttctgttattccacacacctgc 380

                                                                       
Query: 181 tgaggcaggcaagggagaacactagtacccccagcagggctgggaggacttcttcctgtc 240
           ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 381 tgaggcagggaagcgagaacactagtacccccagcagagctggaaggacttcttcctgtc 440

                                                                       
Query: 241 ctgtccctgtgctctggcccggtctgtcaccacggaagacattccagttgcgccagaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtccctgtgctctggcccggtctgtcaccacggaagacattccagttgcgccagaagg 500

                                                        
Query: 301 acacattcctaggcaggtctgacaccttccaactgttcctggcag 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacattcctaggcaggtctgacaccttccaactgttcctggcag 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)