BAC Information

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BAC

Clone NameMSMg01-331E17
Chromosome4 (Build37)
Map Location 152,418,422 - 152,419,071
singlet/doubletsinglet
Overlap genenone
Upstream geneNol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331E17.T7 (MSMg01no331_e17.b1)MSMg01-331E17.TJ (MSMg01no331_e17.g1)
ACCAG447625AG447626
length940737
length of high quality
(start - end)
94 (128 - 221)651 (64 - 714)
definitionCHROMAT_FILE: MSMg01no331_e17.b1 PHD_FILE: MSMg01no331_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:10 2005CHROMAT_FILE: MSMg01no331_e17.g1 PHD_FILE: MSMg01no331_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTCTCTTCTCCCTTCGGTAACCCTTCCCGTCCAACAACACCCCCTCC
CTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATACGGATCCG
CGGAATTCCTGTCTTATCTTTCCAAGATGATGGAGTGTGACTGGGACATG
TAAACCAAATAAACCTATTGTTATCACAGCAGCAGGAACCAAATTACGAC
AGATGAGTGTTCTCCGGGAGAAGAAAGCAGTCCAGTCCGTGGAGGTTGAG
GAGGAGGTGGAGGCCCTATCCGTTTTTCTTTTCTTACTTTCCCTTCCTTC
CTCTCCCCCCTTTCCCCTCGTCCCTTTCCTCCTTCCCTCCTCCCTTTTTT
TTACCTCTTCACCCCCCTCTCTATAATTTTTTTTCACACACTTTACATAT
CTCAATTTCCCCTCCTTCCCTTTCCCTTTCCCTCCCCTTTCCCATTTTCC
TTTTCCCTTTTCATCCCTATTCTATATTACACCCCCCCCCCCCATATATA
TTACTCCCACAATATTATCTAACCCATTTTTTCCCCCCTCCCCTTTTTCC
TTTTCCTCCCTCCCTTATTTCTTCCCCTTTTTCCCCTTTATTCCCCTTTT
TTCCCCTTATTTTTTTTGCACTTTTTTTTATCATCTTTACACACATACCC
ATCGATTCCCCTCCAATTTTCCTCCGCCCTTTTCTCCCTTTTTTCTCTCT
CTTCCCCCCCTACTTATCCTTAATTTACACCCAATTCCCCTTTTCACTTT
TCTCTTTTTCCTTTTCCTCCTTTTGTGAATCTCCTGCCATGTCCGCGTTA
GCATTTCCTTATCCAACCTTATTTCCTTTCCAACCCATTCCAACTCCCTT
TATCCCCCTTTTATCCCCTCCATTCTTCCCCTTTCCTCCCCGTCTCTCTG
GTTTGTTTTTCCCTCTTATCCTAACATAGTTATTTTTTAT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAAAACAGTTTCCACTCCTGGGAGTTTATGCTTGCAACACAGGA
GCCGGGGTGAACGTGGCAGGGACTCCTCACTGAAGCGGGTGCCTTGACAC
AACACTGATGACAAGCATCCTCCAAAGACATCGGCTGTCGGATAGAAGCG
TGCAACTGAAGTCGGATTCAGCCTTGTGTGAAATATTCAAATTCTTCACA
TTTATAACCTCGCAGAGAAGAGGCCGGACCAGAATGCTAAATAATTCATC
GGTATCAGAGTCCTTGCTCCTAATCATGTCGGATAATGAATGGAGAGATG
TGGGAATATCAGAATAGTTGACCTTTCGTGGCAAACAGTGACTTGAGGAG
CAGCGAGAACTGCGTGCTAACCACTGATCGCTCATACCACCCCTCTGGTT
AATTTAATTGTAGGAAATAATGATGGCTAATTTAGCTGATGGATTTTTAC
AGGCTTAATTGACTTCAGAGTTCTTCTGCCCAGTTTGTTACATTGTATCA
ACTGTCTGGTATACAGATGTAACATCTATGTACTCCACTTAAAATGTTTC
TACTGAGGCACTTGTGGCCAGCTCCTGTAATCCCTCCACCTCAGAGGCTG
AGTCTGTGAGGATTATGAGTTCCAGCTTGACCTACATAAAGAGATCCTGT
CTCAAAAACAATAAGTGCTTATAAACAATTTGGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_e17.g1 MSMg01no331_e17.g1 CHROMAT_FILE:
MSMg01no331_e17.g1 PHD_FILE: MSMg01no331_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:11 2005
         (651 letters)



>mm_chr4_152418323_152419372
          Length = 1050

 Score = 1205 bits (623), Expect = 0.0
 Identities = 644/651 (98%), Gaps = 1/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttccactcctgggagtttatgcttgcaacacaggagccggggtgaacgtggcagggac 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 749 gtttccactcctgggagtttatgcttgcaacacaggagccgaggtgaacgtggcagggac 690

                                                                       
Query: 61  tcctcactgaagcgggtgccttgacacaacactgatgacaagcatcctccaaagacatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcctcactgaagcgggtgccttgacacaacactgatgacaagcatcctccaaagacatcg 630

                                                                       
Query: 121 gctgtcggatagaagcgtgcaactgaagtcggattcagccttgtgtgaaatattcaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gctgtcggatagaagcgtgcaactgaagtcggattcagccttgtgtgaaatattcaaatt 570

                                                                       
Query: 181 cttcacatttataacctcgcagagaagaggccggaccagaatgctaaataattcatcggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 569 cttcacatttataacctcgcagagaagaggccggaccagaatgctaaat-attcatcggt 511

                                                                       
Query: 241 atcagagtccttgctcctaatcatgtcggataatgaatggagagatgtgggaatatcaga 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atcagagtctttgctcctaatcatgtcggataatgaatggagagatgtgggaatatcaga 451

                                                                       
Query: 301 atagttgacctttcgtggcaaacagtgacttgaggagcagcgagaactgcgtgctaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 450 atagttgacctttcgtggcaaacagtgacttgaggagcagcgagaactgtgtgctaacca 391

                                                                       
Query: 361 ctgatcgctcataccacccctctggttaatttaattgtaggaaataatgatggctaattt 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgatcactcataccacccctctggttaatttaattgtaggaaataatgatggctaattt 331

                                                                       
Query: 421 agctgatggatttttacaggcttaattgacttcagagttcttctgcccagtttgttacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agctgatggatttttacaggcttaattgacttcagagttcttctgcccagtttgttacat 271

                                                                       
Query: 481 tgtatcaactgtctggtatacagatgtaacatctatgtactccacttaaaatgtttctac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtatcaactgtctggtatacagatgtaacatctatgtactccacttaaaatgtttctac 211

                                                                       
Query: 541 tgaggcacttgtggccagctcctgtaatccctccacctcagaggctgagtctgtgaggat 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 210 tgaggcacttgtggccagctcctgtaatccctccaccccagaggctgagtctgtgaggat 151

                                                              
Query: 601 tatgagttccagcttgacctacataaagagatcctgtctcaaaaacaataa 651
           ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 150 tatgagttccagcttgatctacataaagagatcctgtctcaaaaacaataa 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1050
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1040
Effective search space:   666640
Effective search space used:   666640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)