TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTCCTAGGCACTAATAAAAAATCTAGGCAAATGTTTTACTATAA
AGATTAAAGTCATGACACACTTATAAAAGCAAAATATATTGTAAGCAAGT
CACATGATATTTGGAGTTAGATAATAATTAACCATGCTATAGTGGACAAA
AAGAATTTGGAGTAGGACCAAACATATAGTTTAAGCAATAGAAAATAAAA
ATTAGAAAATCTGGGTCAATCTATTTAGTAAAGCATATAGATTGGATATG
AAGAGAGATATCAAATACAAAGGTTTAGAGGCTTTTATATATGGATAACT
TTTGCATCAGGTAACTTTAATATATTTCTATTTCTCTGTGAGTCTAAGAT
TATTTGTCATAAGCATGCCAATTTTGGAATATATTTAAATAAAACCACGT
TAAAATTAATGTATTTTCATAGTTAATTATTTTTATTATATCTATTTATT
TATGTTCTGTGTTTGTTCTATATTTTCTTTTAAAAAATATAAACATTATT
ACAGAACGTCATACCCTACAACAAGCTATAGGAATTCTGACAGACCCGAA
ACTCTGCATAACCACAGGCTGAAATTTTGGAAGAGAAGGAGAGTCAGAGT
GGCAGAGACACATAGAGACAGAGTGGCAGAGACACATAGAGACAGAGTGG
CAGAGACGCATAGAGACAGAGTGGCAGAGACAC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGATATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATAGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCGCACAATGTGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAATTTGCT
AAACACATGAAACTCAAGAAGAATGAAGACTGAA

Query= MSMg01no331_i02.b1 MSMg01no331_i02.b1 CHROMAT_FILE:
MSMg01no331_i02.b1 PHD_FILE: MSMg01no331_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:25 2005
         (637 letters)



>mm_chr4_30232570_30233607
          Length = 1038

 Score =  994 bits (514), Expect = 0.0
 Identities = 580/602 (96%), Gaps = 2/602 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctattcctaggcactaat-aaaaaatctaggcaaatgttttactataaagatta 62
           ||||||||||||||||| |||||| ||||||||||||||| |||||||||| ||| ||||
Sbjct: 601 ggaattctattcctaggaactaataaaaaaatctaggcaactgttttactacaaacatta 542

                                                                       
Query: 63  aagtcatgacacacttataaaagcaaaatatattgtaagcaagtcacatgatatttggag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aagtcatgacacacttataaaagcaaaatatattgtaagcaagtcacatgatatttggag 482

                                                                       
Query: 123 ttagataataattaaccatgctatagtggacaaaaagaatttggagtaggaccaaacata 182
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 ttagataataattaaccatgctatagtggacaaaaagcatttggagtaggaccaaacata 422

                                                                       
Query: 183 tagtttaagcaatagaaaataaaaattagaaaatctgggtcaatctatttagtaaagcat 242
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 421 tagtttaagcagtagaaaataaaaattagaaaatctgggtcaatctattcagtaaagcat 362

                                                                       
Query: 243 atagattggatatgaagagagatatcaaatacaaaggtttagaggcttttatatatggat 302
           |||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 361 atagattggatatgaagaaagatatcaaatacaaaggtatagaagtttttatatatggat 302

                                                                       
Query: 303 aacttttgcatcaggtaactttaatatatttctatttctctgtgagtctaagattatttg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacttttgcatcaggtaactttaatatatttctatttctctgtgagtctaagattatttg 242

                                                                       
Query: 363 tcataagcatgccaattttggaatatatttaaataaaaccacgttaaaattaatgtattt 422
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 241 tcataagcatgccaattttggaatatatttaaataaaatcatgttaaaattaatgtattt 182

                                                                       
Query: 423 tcatagttaattatttttattatatctatttatttatgttctgtgtttgttctatatttt 482
           ||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 181 tcatagttaatta-tttcattatatctatttatttatgttctgtgtttgttcaatatttt 123

                                                                       
Query: 483 cttttaaaaaatataaacattattacagaacgtcataccctacaacaagctataggaatt 542
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 122 cttttaaaaaatataaacattattacagaaagtcataccctacaacaagctatcggaatt 63

                                                                       
Query: 543 ctgacagacccgaaactctgcataaccacaggctgaaattttggaagagaaggagagtca 602
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 62  ctgacagacctgaaactgtgcataaccacaggctgaaattttggaagagaaggagagaca 3

             
Query: 603 ga 604
           ||
Sbjct: 2   ga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space:   644556
Effective search space used:   644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)