Query= MSMg01no332_d12.b1 MSMg01no332_d12.b1 CHROMAT_FILE:
MSMg01no332_d12.b1 PHD_FILE: MSMg01no332_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:26 2005
(448 letters)
>mm_chr4_127690556_127691398
Length = 843
Score = 745 bits (385), Expect = 0.0
Identities = 431/447 (96%), Gaps = 5/447 (1%)
Strand = Plus / Minus
Query: 1 gggtaacatatcctgtactacagncccaggttaaaatcagacgcacatactccagttctt 60
|||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 642 gggtaacacat-ctgtactacag--ccaggttaaaatcagacgcacatact-cagttctt 587
Query: 61 ttgttgtgttngttgggagtagccagaaagtaggacaggcctgaatgatatagaacagat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttgttgtgtt-gttgggagtagccagaaagtaggacaggcctgaatgatatagaacagat 528
Query: 121 ttactaattaacagctatttctgaatattatgcagccacttagaggggagagatcagttt 180
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 527 ttactaattaacagctatttctgaatattatacagccacctagaggggagagatcagttt 468
Query: 181 atatctgcctacccagactgatgtgtaaggaacattgctaaatggaacaacaatgcacct 240
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atatctgcctaccctgacagatgtgtaaggaacattgctaaatggaacaacaatgcacct 408
Query: 241 tacagaggggtcctctcaatattccacaatgactctaatttgttttatgattctattttc 300
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 407 tacagaggggtcctctcgatattccacaatgactctattttgttttatgattctattttc 348
Query: 301 ttatacatttaaatttttctagaatatttcagagatacttttaataatcagagcgagggg 360
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 347 ttatacatttaaaattttctagaatatttcagagacacttttaataatcagagcgagggg 288
Query: 361 ctgggggcgagtttctttttttttttttaaccatctgctcttctatgctgtctggatttt 420
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctgggggcgattttctttctttttttttaaccatctgctcttctatgctgtctggatttt 228
Query: 421 tgccttgagcatggatcccttttatag 447
|||||||||||||||||||||||||||
Sbjct: 227 tgccttgagcatggatcccttttatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 843
Length adjustment: 10
Effective length of query: 438
Effective length of database: 833
Effective search space: 364854
Effective search space used: 364854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_d12.g1 MSMg01no332_d12.g1 CHROMAT_FILE:
MSMg01no332_d12.g1 PHD_FILE: MSMg01no332_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:26 2005
(628 letters)
>mm_chr4_127539870_127540897
Length = 1028
Score = 1127 bits (583), Expect = 0.0
Identities = 616/629 (97%), Gaps = 7/629 (1%)
Strand = Plus / Plus
Query: 6 tcatcatcatcatcatcatcatcgagtttgttgttgatgaatctgagaaacttctgcctg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcatcatcatcatcatcatcatcgagtttgttgttgatgaatctgagaaacttctgcctg 265
Query: 66 accaagcaggtgtgtagaatggagtgtcttccctcagtaaatccaaagtgatgaaattac 125
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 266 accaagcaggtgtgtagaatggagtatcttccctcagtaaatccaaagtgatgaaattac 325
Query: 126 tttcctgctctgccacaggctgttcgagccagccgttcagataacacacaaacacatatt 185
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttcctgatctgccacaggctgttcgagccagccgttcagataacacacaaacacatatt 385
Query: 186 tccatacagtcccccactaccacacagcccatctcctcggggttgcccaggcatctgaag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccatacagtcccccactaccacacagcccatctcctcggggttgcccaggcatctgaag 445
Query: 246 gccacctggcttcccatcagttgtttggacccagagtgatgcccggtcgctcctcttctg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gccacctggcttcccatcagttgtttggacccagagtgatgcccggtcgctcctcttctg 505
Query: 306 ggtgtaccctagggctgcctctgcatagtcacccacccaggctctagtcacctgggtcag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggtgtaccctagggctgcctctgcatagtcacccacccaggctctagtcacctgggtcag 565
Query: 366 agacccaaggatccctcatctctgtcctagaggcttcagatagtgagtgcaaccatagca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agacccaaggatccctcatctctgtcctagaggcttcagatagtgagtgcaaccatagca 625
Query: 426 tcagcactttgtagctcatgcggacaggaaaaattgcggcaaataaccacgctaatggag 485
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcagcactttgtagctcatgtggacaggaaaaattgcggcaaataaccacgctaatggag 685
Query: 486 ggaatggagggagagagactgatatttccaggccacaagatgaaggaccagcacttcaga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggaatggagggagagagactgatatttccaggccacaagatgaaggaccagcacttcaga 745
Query: 546 tcct-aaccaagtgcttcagcagctgcgggcttctagaggaagaagaagggaaaaaaaaa 604
|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 746 tc-tcaaccaagtgcttcagcagctgcgggcttctagaggaagaagaaggaaaaaaaaaa 804
Query: 605 accg-ca----caggagaatttgccagac 628
||| || ||||||| ||||||||||
Sbjct: 805 accaacaacaacaggagagtttgccagac 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
