BAC Information

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BAC

Clone NameMSMg01-332L13
Chromosome4 (Build37)
Map Location 6,616,396 - 6,616,898
singlet/doubletsinglet
Overlap geneTox
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332L13.T7 (MSMg01no332_l13.b1)MSMg01-332L13.TJ (MSMg01no332_l13.g1)
ACCAG448677AG448678
length1,2951,285
length of high quality
(start - end)		503 (127 - 629)775 (87 - 861)
definitionCHROMAT_FILE: MSMg01no332_l13.b1 PHD_FILE: MSMg01no332_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:28 2005CHROMAT_FILE: MSMg01no332_l13.g1 PHD_FILE: MSMg01no332_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCGATTATTTANNNNCCATATGGCGCTAAGACTCCTAAGGGAGAGG
ATCCGCGGAATTCCCTGATATGCTAAAAACCTTCATGAGCATAATGTGTT
TTGTTTACCAGATATAGCTATCTATTTCAGAGATTCAGTCCTTGAATTTT
TAATAGCTTTGCTGGGATTAAAAGTCAACACTTCATCACTAGTGAATTAA
AAGAATCTTCCTGAAGTCTGAGTATTGTTTGCCAGCTAAGAGAGTTTTCA
ATTAAAAATATTTTCTGTCTTTACATGTTTTATTCCCTATGTTTTCCAAT
GGCAAGTTGTTTTCTGTCTCTGTATTAGTTCAACAACTGATTTAAAAAAA
AAACAAAACAGAAACAACTCTTTGGTTGAAATTTTTAGCTGATAAGAGAA
ATACAAATAAAGAAAAAGCAGCAGATGGTCCCATTGTGACTGAATGAAAA
AAAAGGGTTTTGAGTAACAATGTGTGAATAGGTATAGCCTAATAAAACAC
TCAGCCACCTGCTGCCTGAATCCTTCAGGAAGGCTCGATTGCTTATTCTG
GGGCTTAACCATTAATGTGTCGTTAGGTTGATAGAAACCATCAACTGTGA
GAAGCTTACGTTCATTCTCCCTTTGCTTAGATTGAGTTGGCTTTTCTATA
TTATAAATTGTTTCCCAACTCAATGTATCTGCCAAAGGGTGTAATGAAAG
GGTTTTGGACACCTGGTTAAGCGAAGGAGAGGTAAGGATAATGAGGTGAT
GGGTGTTTCTTTTTTACTTTAAGTCACGGAGCCCCTTCCGCTGGGTCCTG
CAGAAAAGAGGTGGGCTACCATATTTGCGGGAGAGGATAACTAAGTCTCT
GCTCTTTGCTTTAAAAGAAACGCCTTTCTCACAAGAAGAATGCTTTTCTT
CCCGGAATTAATCTTCACCCGACATCAAATAATAAAAACCCTACTTCTCA
CCCGCCCAGTTGTCCCCCACCAATGAAAAAAGGGTTTGGGGGGAAAATCC
CCCCCCCCCCCGGGCATGAGATACAATACTGAAATGGGNAAAGGGGGCCC
CCCCCCCGGGGGGAAGATCAAAAGGCCCCCCTCNAAGGGCTCTTTCTCGA
AGTTNAAAAANTAATNTAAACATTTTNNANAAAATTCATTACATACNNAT
ATNTNTTCTTAAATAAGAGGCCCTTTCTTAAAAACCTGTTTTTCNTNNTT
ATGTGAGNGAAAATCCATACCCTCTCGCTTTGGTTTCGGAAGATANNTNA
CNNNNNNNNNNTTAANNNNNNNNTTCGNNNGTACCGCCGACCTCG

NCCATTTATTTTTNNNAAGAAGGNATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACCCATTCAGCCATTCA
GTTGGAGCAGCACCATATGCTGAAGATGGTGTCCTTTTCCAGTGTGTATT
TCTTAATAAGAAACCTAGCTGTCTATAGGTATATGACTTTATGTCTTGGT
CTTCAGTTAGATTTTGTTAATCAATTTATCTATTTCTGTGCCAAAACTAT
GCTTTCTTTTAAAAATTACTATAGCATTGTAGAACAAATCAGGATTAGTG
ACACCTCTAGCCAGTCTTTTATTGCTTAGAATTGTTTTAACTATCCTGGG
ATATTTTGTTTTTCCACATAAAGTTGATAATTGCTCTTTCAAGGTCGGTA
AAGAATTGTGTTGGAATTTTGATGAGGATTACATTAAACCTGTAGATTGC
TTTTGGTAGGATGGCCATTTTTACTATGTTAATCCTATGGCCCATTAGCA
TGCGAGATCTTTTCAACTTTCCTATATCTTCTCCAATTCCCTTCTTCAAA
GACTTGAAGTTTTTAATCATACAAGTTTTTCACTTGCTTGGTTAAAGCGA
TGCCAAGATATTCTATATCTCTGTCATTTTTCATTTGTATATAGGAAAAC
TACTACTAAATTTTGAGTGTTATTATGTATACAACTACTTTGCTGAAAAT
GTTTATCAATTAGATGTTTCCTGATGAAAATTTCAGGGTCACTTATGTAT
ATTATCATATTACCTAAAAATAAAGGTACTTTGGTATCTTCCTTTCCAAT
TTCTATCCCTTTGATCTCAATTATTTGTCTCATTTCTATAGCTAAGATAT
GGAGTACTAACTTGGATAGGTATAGAGAAAGTGGGCAGTCTTGTCACAGT
TCTGATCTTAGTAGAATTGGCTTGAGTTTCTCTTCATTTAAGCTGATGTT
ATCTATGGGGTTTGCTGTAAACTGCCTTTATTATGTCCTTTATGTCCCAG
TCTCCCCAGAACGGTTGCTTTTTGTCAAGGCCTTTTTTGTATATAATGAA
GAGGTCTTATTGGTTTTGAATTTCCACTTGCTTAAAGGGGGAATAAATTT
ATGTGTTTTGGCTTATGGAACTCCCCCGTATCTCTTGGTATAGCCTTTCT
CCTTATAGGTGAAAGCTCCTCTTGTTTAGGTTCTCCGTAACATTTAACCT
TTTCTTACAAAAAAGAGGCTCTATTTTTCTTTCTTCATCTATTTTGGTTT
TGGTTATTCTGCAATTTTTTCTCCCATTTTACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_l13.b1 MSMg01no332_l13.b1 CHROMAT_FILE:
MSMg01no332_l13.b1 PHD_FILE: MSMg01no332_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:28 2005
         (503 letters)



>mm_chr4_6616196_6617098
          Length = 903

 Score =  888 bits (459), Expect = 0.0
 Identities = 493/505 (97%), Gaps = 4/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagattcagtccttgaatttttaatagctttgctgggattaaaagtcaacacttcat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcagagattccgtccttgaatttttaatagctttgctgggattaaaagtcaacacttcat 644

                                                                       
Query: 61  cactagtgaattaaaagaatcttcctgaagtctgagtattgtttgccagctaagagagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cactagtgaattaaaagaatcttcctgaagtctgagtattgtttgccagctaagagagtt 584

                                                                       
Query: 121 ttcaattaaaaatattttctgtctttacatgttttattccctatgttttccaatggcaag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 583 ttcaattaaaaatattttctgtctttacatgttttagtccctatgttttccaatggctag 524

                                                                       
Query: 181 ttgttttctgtctctgtattagttcaacaactgatttaaaaaaaaaa--caaaacagaaa 238
           ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 523 ttgttttctgtctctgtattagtccaacaactgatttaaaaaaaaaaaacaaaacagaaa 464

                                                                       
Query: 239 caactctttggttgaaatttttagctgataagagaaatacaaataaagaaaaagcagcag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 caactctttggttgaaatttttagctgataagagaaatacaaataaagaaaaagcagcag 404

                                                                       
Query: 299 atggtcccattgtgactgaatgaaaaaaaagggttttgagtaacaatgtgtgaataggta 358
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 403 atggtcccattgtgactgaatgaaaaaaa-gggttttgagtaacaatgtgtgaataggtg 345

                                                                       
Query: 359 tagcctaataaaacactcagccacctgctgcctgaatccttcaggaaggctcgattgctt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 344 tagcctaataaaacactcagccacctgctgcctgaatccttcaggaaggctcggtcgctt 285

                                                                       
Query: 419 attctggggcttaaccattaatgtgtcgttaggttgatagaaaccatcaactgtgagaag 478
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 284 actctggggcttaaccattaatgtgt-gttaggttgatagaaaccatcaactgtgagaag 226

                                    
Query: 479 cttacgttcattctccctttgctta 503
           |||||||||||||||||||||||||
Sbjct: 225 cttacgttcattctccctttgctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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